当前解析结果
SmilChr06G000723| 统一新 Gene ID | SmilChr06G000723 |
|---|---|
| 名称 | SmilChr06G000723 |
| 描述 | guanine nucleotide exchange factor SPIKE 1 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 6598248 - 6617884 / - |
| NCBI Gene ID | LOC130988273 |
|---|---|
| GeneID | 130988273 |
| locus_tag | - |
| NCBI Name | LOC130988273 |
| 原始查询 | LOC130988273 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | guanine nucleotide exchange factor SPIKE 1 |
| 产物 | guanine nucleotide exchange factor SPIKE 1 |
| Arabidopsis | AT4G16340 (SPK1)guanyl-nucleotide exchange factors;GTPase binding;GTP binding protein [Source:NCBI gene (formerly Entrezgene);Acc:827328] identity=77.3; qcov=1.01; evalue=0; confidence=high |
| Rice | Os03g0328000- identity=76; qcov=1.02; evalue=0; confidence=high |
| GO | GO:0005085 (guanyl-nucleotide exchange factor activity); GO:0007264 (small GTPase-mediated signal transduction); GO:0043547 (positive regulation of GTPase activity) |
| KEGG | - |
| Pfam | PF06920 (DHR-2_Lobe_A); PF14429 (DOCK-C2); PF20421 (DHR-2_Lobe_C); PF20422 (DHR-2_Lobe_B); PF28208 (TPR_DOCK9) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130988273 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057768061.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057768061.1 |
| 3 | Trans-golgi network | Trans-golgi network | 0.40000 | XP_057768061.1 |
| 4 | Cytoplasmic vesicle | 细胞质囊泡 | 0.20000 | XP_057768061.1 |
| 5 | Clathrin-coated vesicle | Clathrin-coated vesicle | 0.20000 | XP_057768061.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:6598528 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B50 |
Chr6:6598548 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A21 |
Chr6:6598576 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B124,B2,C8 |
Chr6:6598675 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B14,C28,C46 |
Chr6:6598699 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C10 |
Chr6:6598822 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B109,B122,B140,B7,C85 |
Chr6:6599001 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr6:6599138 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
Chr6:6599203 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B10,B24,B61,C39,C56 |
Chr6:6599635 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B109,B122,B140,B7,C85 |
Chr6:6601027 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C17 |
Chr6:6602133 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B37,B74 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057768061.1PF14429
DOCK-C2 450-616 aa
PF28208
TPR_DOCK9 647-877 aa
PF06920
DHR-2_Lobe_A 1364-1517 aa
PF20422
DHR-2_Lobe_B 1584-1663 aa
PF20421
DHR-2_Lobe_C 1705-1804 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057768061.1 |
Pfam | PF14429 |
DOCK-C2 | Domain | 450 | 616 | 3e-31 | 109.5 | C2 domain in Dock180 and Zizimin proteins |
XP_057768061.1 |
Pfam | PF28208 |
TPR_DOCK9 | Repeat | 647 | 877 | 8e-59 | 199.9 | DOCK6-11, TPR domain |
XP_057768061.1 |
Pfam | PF06920 |
DHR-2_Lobe_A | Repeat | 1364 | 1517 | 1.5e-34 | 120.3 | DHR-2, Lobe A |
XP_057768061.1 |
Pfam | PF20422 |
DHR-2_Lobe_B | Domain | 1584 | 1663 | 4.5e-22 | 78.6 | DHR-2, Lobe B |
XP_057768061.1 |
Pfam | PF20421 |
DHR-2_Lobe_C | Repeat | 1705 | 1804 | 1.6e-25 | 89.7 | DHR-2, Lobe C |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。