当前解析结果
SmilChr01G002934| 统一新 Gene ID | SmilChr01G002934 |
|---|---|
| 名称 | SmilChr01G002934 |
| 描述 | pentatricopeptide repeat-containing protein At4g31070, mitochondrial |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 48104584 - 48106855 / + |
| NCBI Gene ID | LOC130988274 |
|---|---|
| GeneID | 130988274 |
| locus_tag | - |
| NCBI Name | LOC130988274 |
| 原始查询 | LOC130988274 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pentatricopeptide repeat-containing protein At4g31070, mitochondrial |
| 产物 | pentatricopeptide repeat-containing protein At4g31070%2C mitochondrial |
| Arabidopsis | AT4G31070 (AT4G31070)PPR superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829234] identity=47.8; qcov=0.974; evalue=1.57e-178; confidence=high |
| Rice | Os06g0185700- identity=35.2; qcov=0.899; evalue=5.33e-113; confidence=medium |
| GO | GO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0009451 (RNA modification) |
| KEGG | - |
| Pfam | PF01535 (PPR); PF20431 (E_motif) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130988274 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057768064.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057768064.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057768064.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057768064.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057768064.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:48104961 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B79 |
Chr1:48105280 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A11,B19,B67,B85,C53 |
Chr1:48105360 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C70 |
Chr1:48105404 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:48105412 |
TCG |
T |
2bp_deletion | frameshift_variant | 1 | B74 |
Chr1:48105412 |
TCG |
T |
2bp_deletion | CDS_variant | 1 | B74 |
Chr1:48105425 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:48105455 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B109,B114,B125,B4,C36 |
Chr1:48105461 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B100 |
Chr1:48105572 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B100 |
Chr1:48105656 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B17 |
Chr1:48105687 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A21 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057768064.1PF01535
PPR 94-119 aa
PF01535
PPR 122-151 aa
PF01535
PPR 196-222 aa
PF01535
PPR 326-357 aa
PF01535
PPR 398-427 aa
PF01535
PPR 428-456 aa
PF01535
PPR 466-489 aa
PF01535
PPR 503-527 aa
PF20431
E_motif 547-606 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057768064.1 |
Pfam | PF01535 |
PPR | Repeat | 94 | 119 | 1.3e-47 | 157.4 | PPR repeat |
XP_057768064.1 |
Pfam | PF01535 |
PPR | Repeat | 122 | 151 | 1.3e-47 | 157.4 | PPR repeat |
XP_057768064.1 |
Pfam | PF01535 |
PPR | Repeat | 196 | 222 | 1.3e-47 | 157.4 | PPR repeat |
XP_057768064.1 |
Pfam | PF01535 |
PPR | Repeat | 326 | 357 | 1.3e-47 | 157.4 | PPR repeat |
XP_057768064.1 |
Pfam | PF01535 |
PPR | Repeat | 398 | 427 | 1.3e-47 | 157.4 | PPR repeat |
XP_057768064.1 |
Pfam | PF01535 |
PPR | Repeat | 428 | 456 | 1.3e-47 | 157.4 | PPR repeat |
XP_057768064.1 |
Pfam | PF01535 |
PPR | Repeat | 466 | 489 | 1.3e-47 | 157.4 | PPR repeat |
XP_057768064.1 |
Pfam | PF01535 |
PPR | Repeat | 503 | 527 | 1.3e-47 | 157.4 | PPR repeat |
XP_057768064.1 |
Pfam | PF20431 |
E_motif | Repeat | 547 | 606 | 3.3e-13 | 50.4 | E motif |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。