当前解析结果
SmilChr06G000729| 统一新 Gene ID | SmilChr06G000729 |
|---|---|
| 名称 | SmilChr06G000729 |
| 描述 | protein FAR1-RELATED SEQUENCE 5-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 6699883 - 6703507 / - |
| NCBI Gene ID | LOC130988276 |
|---|---|
| GeneID | 130988276 |
| locus_tag | - |
| NCBI Name | LOC130988276 |
| 原始查询 | LOC130988276 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein FAR1-RELATED SEQUENCE 5-like |
| 产物 | protein FAR1-RELATED SEQUENCE 5-like |
| Arabidopsis | AT4G38180 (FRS5)FAR1-related sequence 5 [Source:NCBI gene (formerly Entrezgene);Acc:829974] identity=27.4; qcov=0.711; evalue=2.33e-77; confidence=low |
| Rice | Os06g0166100- identity=32.6; qcov=0.728; evalue=1.08e-109; confidence=low |
| GO | GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF03101 (FAR1); PF04434 (SWIM); PF10551 (MULE); PF21056 (ZSWIM1-3_RNaseH-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130988276 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057768063.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057768063.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057768063.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057768063.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057768063.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:6700297 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B32,C65 |
Chr6:6700310 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B102,C51 |
Chr6:6700331 |
TC |
T |
1bp_deletion | frameshift_variant | 2 | B120,C39 |
Chr6:6700331 |
TC |
T |
1bp_deletion | CDS_variant | 2 | B120,C39 |
Chr6:6700338 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B100,B35 |
Chr6:6700366 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B106,B20,B46 |
Chr6:6700496 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B32,C65 |
Chr6:6700529 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B89 |
Chr6:6700566 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C73 |
Chr6:6700575 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B128,B16,C45,C63,C73 |
Chr6:6700582 |
ATC |
A |
2bp_deletion | frameshift_variant | 5 | B128,B16,C45,C63,C73 |
Chr6:6700582 |
ATC |
A |
2bp_deletion | CDS_variant | 5 | B128,B16,C45,C63,C73 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057768063.1PF03101
FAR1 141-230 aa
PF21056
ZSWIM1-3_RNaseH-like 326-437 aa
PF10551
MULE 354-448 aa
PF04434
SWIM 635-671 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057768063.1 |
Pfam | PF03101 |
FAR1 | Domain | 141 | 230 | 1.2e-15 | 58.7 | FAR1 DNA-binding domain |
XP_057768063.1 |
Pfam | PF21056 |
ZSWIM1-3_RNaseH-like | Domain | 326 | 437 | 2.3e-07 | 31.5 | Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain |
XP_057768063.1 |
Pfam | PF10551 |
MULE | Domain | 354 | 448 | 3.1e-28 | 98.7 | MULE transposase domain |
XP_057768063.1 |
Pfam | PF04434 |
SWIM | Domain | 635 | 671 | 0.00042 | 20.5 | SWIM zinc finger |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。