当前解析结果
SmilChr06G000737| 统一新 Gene ID | SmilChr06G000737 |
|---|---|
| 名称 | SmilChr06G000737 |
| 描述 | EIN3-binding F-box protein 1-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 6802153 - 6806030 / - |
| NCBI Gene ID | LOC130988289 |
|---|---|
| GeneID | 130988289 |
| locus_tag | - |
| NCBI Name | LOC130988289 |
| 原始查询 | LOC130988289 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | EIN3-binding F-box protein 1-like |
| 产物 | EIN3-binding F-box protein 1-like |
| Arabidopsis | AT2G25490 (EBF1)EIN3-binding F box protein 1 [Source:NCBI gene (formerly Entrezgene);Acc:817087] identity=56.2; qcov=1; evalue=0; confidence=high |
| Rice | Os02g0200900 (OsFbox072)- identity=51.9; qcov=0.945; evalue=0; confidence=high |
| GO | GO:0005515 (protein binding); GO:0019005 (SCF ubiquitin ligase complex); GO:0031146 (SCF-dependent proteasomal ubiquitin-dependent protein catabolic process) |
| KEGG | smil04016 (MAPK signaling pathway - plant - Salvia miltiorrhiza (redroot sage)); smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00646 (F-box); PF12937 (F-box-like); PF13516 (LRR_6); PF25372 (LRR_FBXL15) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130988289 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.80000 | XP_057768080.1 |
| 2 | Chloroplast | 叶绿体 | 0.20000 | XP_057768080.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057768080.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057768080.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057768080.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:6803028 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B30 |
Chr6:6803194 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A21,B28,C16,C52,D5 |
Chr6:6803277 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B23,C53,C61,D3 |
Chr6:6803373 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B124,B136,B2,C8,D4 |
Chr6:6803494 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C42 |
Chr6:6803517 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C42 |
Chr6:6803583 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B41,B44,D10 |
Chr6:6803680 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D4 |
Chr6:6803753 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C79 |
Chr6:6803889 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B37 |
Chr6:6803939 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr6:6804144 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A15,A19,B18,B45,C75 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057768080.1PF12937
F-box-like 64-100 aa
PF00646
F-box 66-103 aa
PF25372
LRR_FBXL15 162-403 aa
PF13516
LRR_6 206-229 aa
PF13516
LRR_6 232-255 aa
PF25372
LRR_FBXL15 469-625 aa
PF13516
LRR_6 549-571 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057768080.1 |
Pfam | PF12937 |
F-box-like | Domain | 64 | 100 | 2.3e-06 | 27.9 | F-box-like |
XP_057768080.1 |
Pfam | PF00646 |
F-box | Domain | 66 | 103 | 4.2e-05 | 24.0 | F-box domain |
XP_057768080.1 |
Pfam | PF25372 |
LRR_FBXL15 | Repeat | 162 | 403 | 1.8e-37 | 129.6 | F-box/LRR-repeat protein 15, leucine rich repeat domain |
XP_057768080.1 |
Pfam | PF13516 |
LRR_6 | Repeat | 206 | 229 | 2.6e-18 | 65.2 | Leucine Rich repeat |
XP_057768080.1 |
Pfam | PF13516 |
LRR_6 | Repeat | 232 | 255 | 2.6e-18 | 65.2 | Leucine Rich repeat |
XP_057768080.1 |
Pfam | PF25372 |
LRR_FBXL15 | Repeat | 469 | 625 | 1.8e-37 | 129.6 | F-box/LRR-repeat protein 15, leucine rich repeat domain |
XP_057768080.1 |
Pfam | PF13516 |
LRR_6 | Repeat | 549 | 571 | 2.6e-18 | 65.2 | Leucine Rich repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。