Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000748`

染色体: Chr06 坐标: 6957372-6960352 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000748`
名称	SmilChr06G000748
描述	uncharacterized SmilChr06G000748
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	6957372 - 6960352 / `+`

ID 对照

NCBI Gene ID	`LOC130988299`
GeneID	`130988299`
locus_tag	`-`
NCBI Name	`LOC130988299`
原始查询	`LOC130988299`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os11g0116400; species=rice; confidence=high
产物	hit=Os11g0116400; species=rice; confidence=high
Arabidopsis	`AT3G08740` (AT3G08740) elongation factor P (EF-P) family protein [Source:NCBI gene (formerly Entrezgene);Acc:820021] identity=64; qcov=1.03; evalue=8.41e-111; confidence=high
Rice	`Os11g0116400` - identity=73.5; qcov=0.921; evalue=6.88e-114; confidence=high
GO	GO:0003746 (translation elongation factor activity); GO:0005737 (cytoplasm); GO:0006414 (translational elongation); GO:0043043 (peptide biosynthetic process)
KEGG	-
Pfam	PF01132 (EFP); PF08207 (EFP_N); PF09285 (Elong-fact-P_C)
InterPro	-
eggNOG	-
NR	GeneID:130988299

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057768092.1`
2	Chloroplast stroma	叶绿体基质	0.60000	`XP_057768092.1`
3	Nucleus	细胞核	0.00000	`XP_057768092.1`
4	Chromosome	染色体	0.00000	`XP_057768092.1`
5	Centromere	着丝粒	0.00000	`XP_057768092.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:6957657`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A8,B35
`Chr6:6957721`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A8,B30,C36
`Chr6:6957724`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A8
`Chr6:6957735`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A8
`Chr6:6957753`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B132,B30
`Chr6:6957754`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B79,C78
`Chr6:6957755`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B10
`Chr6:6957757`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B104,B132,B30
`Chr6:6957862`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B104,B134,C21,C69
`Chr6:6957874`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A14,C64,C66,C85
`Chr6:6957875`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B122,C71
`Chr6:6957905`	`G`	`A`	EMS_canonical_SNV	stop_gained	2	C20,C31

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057768092.1

229 aa

114

229

EFP_N

EFP

Elong-fact-P_C

PF08207 EFP_N 48-104 aa PF01132 EFP 111-166 aa PF09285 Elong-fact-P_C 173-228 aa

XP_057768093.1

229 aa

114

229

EFP_N

EFP

Elong-fact-P_C

PF08207 EFP_N 48-104 aa PF01132 EFP 111-166 aa PF09285 Elong-fact-P_C 173-228 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057768092.1`	Pfam	`PF08207`	EFP_N	Domain	48	104	2.1e-25	89.1	Elongation factor P (EF-P) KOW-like domain
`XP_057768092.1`	Pfam	`PF01132`	EFP	Domain	111	166	9.1e-22	77.4	Elongation factor P (EF-P) OB domain
`XP_057768092.1`	Pfam	`PF09285`	Elong-fact-P_C	Domain	173	228	3e-26	91.6	Elongation factor P, C-terminal
`XP_057768093.1`	Pfam	`PF08207`	EFP_N	Domain	48	104	2.1e-25	89.1	Elongation factor P (EF-P) KOW-like domain
`XP_057768093.1`	Pfam	`PF01132`	EFP	Domain	111	166	9.1e-22	77.4	Elongation factor P (EF-P) OB domain
`XP_057768093.1`	Pfam	`PF09285`	Elong-fact-P_C	Domain	173	228	3e-26	91.6	Elongation factor P, C-terminal

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XR_009090044.1
AATGTAAATAAAGAAAATAATAGGAGCCCTGATTTTGTTTTTTCGTATCCATTACTATCAGTGCAGCTGCTACTTCTTATTTGTCTCTTTTCTTCTTCATTTTCACTTATAATATAGATATAGATTCGCTCTTCTTCCTTAACTAATCCAAGTCTGCAGCATTAACCGCCGTTGGATTCCGATTCCGGCATGGCGGGAGTTTCCGGTTTCAAATGCCCCTGCTTCCGGCCGCTGTCTTCCTCACTCTCCTACAGTTCCAG...

XM_057912110.1
GTCGACCCGTCGCACACCTGTGCGACGGTCGCACCCAAGAATTGGCGATTTGAAAGAGAGAGAGAAGAGTAGAAATTGGTGAATTGAGAAAATGTAAATAAAGAAAATAATAGGAGCCCTGATTTTGTTTTTTCTCTGCAGCATTAACCGCCGTTGGATTCCGATTCCGGCATGGCGGGAGTTTCCGGTTTCAAATGCCCCTGCTTCCGGCCGCTGTCTTCCTCACTCTCCTACAGTTCCAGCCGTTTTCCTGCGCCGCA...

CDS

2 records

下载 CDS FASTA

LOC130988299
ATGGCGGGAGTTTCCGGTTTCAAATGCCCCTGCTTCCGGCCGCTGTCTTCCTCACTCTCCTACAGTTCCAGCCGTTTTCCTGCGCCGCAGCTCAGGATTCCGCGCCGTCTCTCCACATTCCCCAGAATTTACGCATTGACGAGCAACGATATTAAAGTCGGCCTCAACATTGAAGTGGATGGGAATCCGTGGAAGGTTATTGAGTTCCTCCATGTTAAACCTGGAAAGGGGGCAGCATTTGTAAGGACCACATTGCGAAA...

Protein

2 records

下载 Protein FASTA

XP_057768092.1
MAGVSGFKCPCFRPLSSSLSYSSSRFPAPQLRIPRRLSTFPRIYALTSNDIKVGLNIEVDGNPWKVIEFLHVKPGKGAAFVRTTLRNYVTGNQVEKTFRAGSKIEEADISKETKQYTYKDGAQYVFMDLNTYEEARLNAVDVGDKDKWLKEGMDCNLLFWNGKVIDFELPITVKLNVTEVDPGLKGDTAQGGSKPATVETGAVVSVPLFVNTGDTILIDTRTGQYMSRA

XP_057768093.1
MAGVSGFKCPCFRPLSSSLSYSSSRFPAPQLRIPRRLSTFPRIYALTSNDIKVGLNIEVDGNPWKVIEFLHVKPGKGAAFVRTTLRNYVTGNQVEKTFRAGSKIEEADISKETKQYTYKDGAQYVFMDLNTYEEARLNAVDVGDKDKWLKEGMDCNLLFWNGKVIDFELPITVKLNVTEVDPGLKGDTAQGGSKPATVETGAVVSVPLFVNTGDTILIDTRTGQYMSRA

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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