Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000771`

染色体: Chr06 坐标: 7202815-7207634 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000771`
名称	SmilChr06G000771
描述	3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	7202815 - 7207634 / `-`

ID 对照

NCBI Gene ID	`LOC130988317`
GeneID	`130988317`
locus_tag	`-`
NCBI Name	`LOC130988317`
原始查询	`LOC130988317`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial
产物	3-hydroxyisobutyryl-CoA hydrolase-like protein 3%2C mitochondrial
Arabidopsis	`AT4G13360` (AT4G13360) ATP-dependent caseinolytic (Clp) protease/crotonase family protein [Source:NCBI gene (formerly Entrezgene);Acc:826967] identity=65.5; qcov=1.01; evalue=0; confidence=high
Rice	`Os06g0594100` (OsCRO) - identity=68.4; qcov=0.906; evalue=0; confidence=high
GO	GO:0003860 (3-hydroxyisobutyryl-CoA hydrolase activity); GO:0005829 (cytosol); GO:0006574 (L-valine catabolic process)
KEGG	smil00280 (Valine, leucine and isoleucine degradation - Salvia miltiorrhiza (redroot sage)); smil00410 (beta-Alanine metabolism - Salvia miltiorrhiza (redroot sage)); smil00640 (Propanoate metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage))
Pfam	PF00378 (ECH_1); PF16113 (ECH_2)
InterPro	-
eggNOG	-
NR	GeneID:130988317

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057768115.1`
2	Mitochondrion matrix	线粒体基质	0.40000	`XP_057768115.1`
3	Chloroplast	叶绿体	0.20000	`XP_057768117.1`
4	Nucleus	细胞核	0.00000	`XP_057768115.1`
5	Chromosome	染色体	0.00000	`XP_057768115.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:7204147`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B50
`Chr6:7204171`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B47,C13,C59,C60,D1
`Chr6:7204180`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D2
`Chr6:7204430`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B97
`Chr6:7204729`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr6:7204802`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B33,C43
`Chr6:7205202`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr6:7207361`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr6:7207514`	`AG`	`A`	1bp_deletion	frameshift_variant	1	A7
`Chr6:7207514`	`AG`	`A`	1bp_deletion	CDS_variant	1	A7
`Chr6:7207528`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A2,C64,C66

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057768115.1

415 aa

208

415

ECH_1

ECH_2

PF00378 ECH_1 50-266 aa PF16113 ECH_2 54-403 aa

XP_057768116.1

411 aa

206

411

ECH_1

ECH_2

PF00378 ECH_1 50-262 aa PF16113 ECH_2 54-399 aa

XP_057768117.1

426 aa

213

426

ECH_1

ECH_2

PF00378 ECH_1 50-277 aa PF16113 ECH_2 54-414 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057768115.1`	Pfam	`PF00378`	ECH_1	Domain	50	266	5.1e-23	82.4	Enoyl-CoA hydratase/isomerase
`XP_057768115.1`	Pfam	`PF16113`	ECH_2	Domain	54	403	6.9e-104	348.7	Enoyl-CoA hydratase/isomerase
`XP_057768116.1`	Pfam	`PF00378`	ECH_1	Domain	50	262	1.2e-23	84.5	Enoyl-CoA hydratase/isomerase
`XP_057768116.1`	Pfam	`PF16113`	ECH_2	Domain	54	399	3.4e-104	349.7	Enoyl-CoA hydratase/isomerase
`XP_057768117.1`	Pfam	`PF00378`	ECH_1	Domain	50	277	4.5e-21	76.0	Enoyl-CoA hydratase/isomerase
`XP_057768117.1`	Pfam	`PF16113`	ECH_2	Domain	54	414	4e-102	342.9	Enoyl-CoA hydratase/isomerase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057912134.1
AATAATTGGTCACAAACTCACAGTAAAAAGTGATAGTGAGATCGTAAATGGGCAATCAAACTCGGTTTTCTCTGTTGTGGAAATCATGCGAACTTTGCTTCATCTTCTAAATCACTCCCCTTTACCCACTCTCTCCTCATTTCGATCTTCTGCAAAATCCTACAATTTCCGCCACTCAACCGTCCGAAGCTTTGCAGTTATGGCCGATGAGCTCGTCAGAGGAAATGTGCTCCAAAACGGCGTCGCTCTCATCACTCTCG...

XM_057912132.1
AATAATTGGTCACAAACTCACAGTAAAAAGTGATAGTGAGATCGTAAATGGGCAATCAAACTCGGTTTTCTCTGTTGTGGAAATCATGCGAACTTTGCTTCATCTTCTAAATCACTCCCCTTTACCCACTCTCTCCTCATTTCGATCTTCTGCAAAATCCTACAATTTCCGCCACTCAACCGTCCGAAGCTTTGCAGTTATGGCCGATGAGCTCGTCAGAGGAAATGTGCTCCAAAACGGCGTCGCTCTCATCACTCTCG...

CDS

3 records

下载 CDS FASTA

LOC130988317
ATGCGAACTTTGCTTCATCTTCTAAATCACTCCCCTTTACCCACTCTCTCCTCATTTCGATCTTCTGCAAAATCCTACAATTTCCGCCACTCAACCGTCCGAAGCTTTGCAGTTATGGCCGATGAGCTCGTCAGAGGAAATGTGCTCCAAAACGGCGTCGCTCTCATCACTCTCGATCGCCCCAAAGCCCTTAATGCCATGAACTTAGATATGGACGTCAAGTATAAGAGTTACCTTGATGAATGGGAATCGGACCCGAG...

Protein

3 records

下载 Protein FASTA

XP_057768115.1
MRTLLHLLNHSPLPTLSSFRSSAKSYNFRHSTVRSFAVMADELVRGNVLQNGVALITLDRPKALNAMNLDMDVKYKSYLDEWESDPRVKCVLVESSSSRAFSAGMDIKGVAAEIQKDKSTPLVQKVFTAEYSLICKIFEYKKPYICFMDGITMGFGIGLSGHGRYRLITEKTVLAMPENGIGLFPDVGFAYIAAKSPGEGAVGAYLGLTGNRISTPADALYVGLGTHYVPSGSLAALKDDLLATTFSEDPDQDIRTLLEK...

XP_057768116.1
MRTLLHLLNHSPLPTLSSFRSSAKSYNFRHSTVRSFAVMADELVRGNVLQNGVALITLDRPKALNAMNLDMDVKYKSYLDEWESDPRVKCVLVESSSSRAFSAGGDVKQITTKNQLSDMIEVFTAEYSLICKIFEYKKPYICFMDGITMGFGIGLSGHGRYRLITEKTVLAMPENGIGLFPDVGFAYIAAKSPGEGAVGAYLGLTGNRISTPADALYVGLGTHYVPSGSLAALKDDLLATTFSEDPDQDIRTLLEKYSRN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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