Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000773`

染色体: Chr06 坐标: 7251665-7256146 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000773`
名称	SmilChr06G000773
描述	palmitoyl-acyl carrier protein thioesterase, chloroplastic
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	7251665 - 7256146 / `-`

ID 对照

NCBI Gene ID	`LOC130988320`
GeneID	`130988320`
locus_tag	`-`
NCBI Name	`LOC130988320`
原始查询	`LOC130988320`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	palmitoyl-acyl carrier protein thioesterase, chloroplastic
产物	palmitoyl-acyl carrier protein thioesterase%2C chloroplastic
Arabidopsis	`AT1G08510` (FATB) fatty acyl-ACP thioesterases B [Source:NCBI gene (formerly Entrezgene);Acc:837372] identity=70.4; qcov=0.976; evalue=0; confidence=high
Rice	`Os06g0143400` (FATB1) - identity=62.1; qcov=1.03; evalue=0; confidence=high
GO	GO:0000036 (acyl carrier activity); GO:0006633 (fatty acid biosynthetic process); GO:0016297 (fatty acyl-[ACP] hydrolase activity)
KEGG	smil00061 (Fatty acid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01212 (Fatty acid metabolism - Salvia miltiorrhiza (redroot sage))
Pfam	PF01643 (Acyl-ACP_TE); PF12590 (Acyl-thio_N); PF20791 (Acyl-ACP_TE_C)
InterPro	-
eggNOG	-
NR	GeneID:130988320

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057768120.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057768120.1`
3	Nucleus	细胞核	0.00000	`XP_057768120.1`
4	Chromosome	染色体	0.00000	`XP_057768120.1`
5	Centromere	着丝粒	0.00000	`XP_057768120.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:7251970`	`G`	`GA`	1bp_insertion	frameshift_variant	3	B25,C49,C9
`Chr6:7251970`	`G`	`GA`	1bp_insertion	CDS_variant	3	B25,C49,C9
`Chr6:7251977`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B136,D10
`Chr6:7252132`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A15,A19,B18,B45,C75
`Chr6:7254682`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B105

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057768120.1

422 aa

211

422

Acyl-thio_N

Acyl-ACP_TE

Acyl-ACP_TE_C

PF12590 Acyl-thio_N 1-129 aa PF01643 Acyl-ACP_TE 141-275 aa PF20791 Acyl-ACP_TE_C 300-404 aa

XP_057768121.1

422 aa

211

422

Acyl-thio_N

Acyl-ACP_TE

Acyl-ACP_TE_C

PF12590 Acyl-thio_N 1-129 aa PF01643 Acyl-ACP_TE 141-275 aa PF20791 Acyl-ACP_TE_C 300-404 aa

XP_057768122.1

422 aa

211

422

Acyl-thio_N

Acyl-ACP_TE

Acyl-ACP_TE_C

PF12590 Acyl-thio_N 1-129 aa PF01643 Acyl-ACP_TE 141-275 aa PF20791 Acyl-ACP_TE_C 300-404 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057768120.1`	Pfam	`PF12590`	Acyl-thio_N	Family	1	129	3.8e-52	177.0	Acyl-ATP thioesterase
`XP_057768120.1`	Pfam	`PF01643`	Acyl-ACP_TE	Domain	141	275	7e-43	146.2	Acyl-ACP thioesterase N-terminal domain
`XP_057768120.1`	Pfam	`PF20791`	Acyl-ACP_TE_C	Domain	300	404	4.6e-28	98.1	Acyl-ACP thioesterase C-terminal domain
`XP_057768121.1`	Pfam	`PF12590`	Acyl-thio_N	Family	1	129	3.8e-52	177.0	Acyl-ATP thioesterase
`XP_057768121.1`	Pfam	`PF01643`	Acyl-ACP_TE	Domain	141	275	7e-43	146.2	Acyl-ACP thioesterase N-terminal domain
`XP_057768121.1`	Pfam	`PF20791`	Acyl-ACP_TE_C	Domain	300	404	4.6e-28	98.1	Acyl-ACP thioesterase C-terminal domain
`XP_057768122.1`	Pfam	`PF12590`	Acyl-thio_N	Family	1	129	3.8e-52	177.0	Acyl-ATP thioesterase
`XP_057768122.1`	Pfam	`PF01643`	Acyl-ACP_TE	Domain	141	275	7e-43	146.2	Acyl-ACP thioesterase N-terminal domain
`XP_057768122.1`	Pfam	`PF20791`	Acyl-ACP_TE_C	Domain	300	404	4.6e-28	98.1	Acyl-ACP thioesterase C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057912139.1
ACATCCAATTTAGCAGCATTTGTTGCAAACTATCCCCAAATCTTAGTAATTTAGTGTATTAAATAGTGCGTTAAATTGTTGTTGCAGAGTGGAAACAATGATGGCAGGGGCGGGAATAGGAAGGGAAGAGAGGGGCAATTCCGGCATAAGAGATGAAAAAGGAGGCCATTAATAAGGAAGTTGAACGAGAGGCGGGAGGCCCAGCTGAGTGGAAGAGGTTTGTTAGTGGTGGAATCATTTATTTGTTGCTCTATCTCAAT...

XM_057912137.1
AGAGTGGAAACAATGATGGCAGGGGCGGGAATAGGAAGGGAAGAGAGGGGCAATTCCGGCATAAGAGATGAAAAAGGAGGCCATTAATAAGGAAGTTGAACGAGAGGCGGGAGGCCCAGGTAGGCATTTGCTATGTAATGTTATTATTTGCATTTTGTTTTTTCTTACTATAAAAAGGAGTTGCTGGACGCAATTGCCTACCACCAACAAATGCGCTGTCTTCTCTCTCCACTCTCTCCTTCTCTCTCCTGCTCCCTCTC...

CDS

3 records

下载 CDS FASTA

LOC130988320
ATGGTCGCCACTGCTGCAACTTCTGCATTTCTCCCAATACCTTCCCCAGCTTCAGACTCTGTTGGAAAAACATCAGGAAAGGTTGTTGGGAGCATCCCTGCAGCAAGTATTGATGCTCGTGCCACCAATGCTAAGTCAAAATCCACATCATCAGGAAGATTGCAGGTGAAGGCTAATGCACAAGCCCCTCCCAAGGTCAATGGGACTAAGGTTGGCTCTATGGAGTCTCTGAAGACTGAGGACATGTCACCTCCACCGAG...

Protein

3 records

下载 Protein FASTA

XP_057768120.1
MVATAATSAFLPIPSPASDSVGKTSGKVVGSIPAASIDARATNAKSKSTSSGRLQVKANAQAPPKVNGTKVGSMESLKTEDMSPPPRTFINQLPDWSMLLAAITTIFLAAEKQWMMLDWKPKRTDMLVDPFGLGRIVQDGFVFRQNFSIRSYEIGADRTASVETLMNHLQETALNHVKNAGLLADGFGSTPEMCKRNLIWVVTKMQVVVDRYPTWGDVVQVDTWVAASGKNGMRRDWLVRDSNTGEILTRASSLWVMMNK...

XP_057768121.1
MVATAATSAFLPIPSPASDSVGKTSGKVVGSIPAASIDARATNAKSKSTSSGRLQVKANAQAPPKVNGTKVGSMESLKTEDMSPPPRTFINQLPDWSMLLAAITTIFLAAEKQWMMLDWKPKRTDMLVDPFGLGRIVQDGFVFRQNFSIRSYEIGADRTASVETLMNHLQETALNHVKNAGLLADGFGSTPEMCKRNLIWVVTKMQVVVDRYPTWGDVVQVDTWVAASGKNGMRRDWLVRDSNTGEILTRASSLWVMMNK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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