当前解析结果
SmilChr06G000832| 统一新 Gene ID | SmilChr06G000832 |
|---|---|
| 名称 | SmilChr06G000832 |
| 描述 | heme oxygenase 1, chloroplastic-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 7833028 - 7842373 / + |
| NCBI Gene ID | LOC130988367 |
|---|---|
| GeneID | 130988367 |
| locus_tag | - |
| NCBI Name | LOC130988367 |
| 原始查询 | LOC130988367 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | heme oxygenase 1, chloroplastic-like |
| 产物 | heme oxygenase 1%2C chloroplastic-like |
| Arabidopsis | AT2G26670 (TED4)Plant heme oxygenase (decyclizing) family protein [Source:NCBI gene (formerly Entrezgene);Acc:817208] identity=47.3; qcov=1.11; evalue=2.53e-86; confidence=high |
| Rice | Os06g0603000 (SE5)- identity=59.9; qcov=0.838; evalue=3.52e-92; confidence=high |
| GO | GO:0004392 (heme oxygenase (decyclizing) activity); GO:0006788 (heme oxidation); GO:0010024 (phytochromobilin biosynthetic process) |
| KEGG | smil00860 (Porphyrin metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01126 (Heme_oxygenase) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130988367 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057768173.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 1.00000 | XP_057768173.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057768173.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057768173.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057768173.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:7833268 |
AG |
A |
1bp_deletion | frameshift_variant | 1 | B103 |
Chr6:7833268 |
AG |
A |
1bp_deletion | CDS_variant | 1 | B103 |
Chr6:7836020 |
G |
A |
EMS_canonical_SNV | stop_gained | 2 | B26,B86 |
Chr6:7836020 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B26,B86 |
Chr6:7836022 |
G |
GA |
1bp_insertion | frameshift_variant | 1 | B130 |
Chr6:7836022 |
G |
GA |
1bp_insertion | CDS_variant | 1 | B130 |
Chr6:7841572 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B75 |
Chr6:7841598 |
T |
TAC |
2bp_insertion | frameshift_variant | 17 | A10,A22,B106,B119,B136,B4,B42,B43,B52,B66,B76,B85,B94,C40,C54,C60,C85 |
Chr6:7841599 |
GGT |
G |
2bp_deletion | frameshift_variant | 17 | A10,A22,B106,B119,B136,B4,B42,B43,B52,B66,B76,B85,B94,C40,C54,C60,C85 |
Chr6:7841711 |
CT |
C |
1bp_deletion | frameshift_variant | 1 | C4 |
Chr6:7841711 |
CT |
C |
1bp_deletion | CDS_variant | 1 | C4 |
Chr6:7841867 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B75 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057768173.1PF01126
Heme_oxygenase 76-239 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057768173.1 |
Pfam | PF01126 |
Heme_oxygenase | Domain | 76 | 239 | 1.6e-14 | 54.9 | Heme oxygenase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。