当前解析结果
SmilChr06G000849| 统一新 Gene ID | SmilChr06G000849 |
|---|---|
| 名称 | SmilChr06G000849 |
| 描述 | ankyrin repeat-containing protein At5g02620-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 8036458 - 8041672 / - |
| NCBI Gene ID | LOC130988382 |
|---|---|
| GeneID | 130988382 |
| locus_tag | - |
| NCBI Name | LOC130988382 |
| 原始查询 | LOC130988382 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ankyrin repeat-containing protein At5g02620-like |
| 产物 | ankyrin repeat-containing protein At5g02620-like |
| Arabidopsis | AT3G18670 (AT3G18670)Ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:821398] identity=35.9; qcov=1; evalue=2.45e-115; confidence=medium |
| Rice | Os08g0542700- identity=32.8; qcov=0.286; evalue=6.5e-12; confidence=weak |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00023 (Ank); PF12796 (Ank_2); PF13606 (Ank_3); PF13962 (PGG); PF14223 (Retrotran_gag_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130988382 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057768183.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057768183.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057768183.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057768183.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057768183.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:8036772 |
T |
TCC |
2bp_insertion | frameshift_variant | 1 | B109 |
Chr6:8036772 |
T |
TCC |
2bp_insertion | CDS_variant | 1 | B109 |
Chr6:8036773 |
CT |
C |
1bp_deletion | frameshift_variant | 81 | A14,A16,A19,A2,A20,A22,A8,B10,B100,B101,B104,B105,B106,B11,B113,B120,B124,B127,B128,B133,B135,B139,B14,B19,B20,B23,B29,B3,B32,B35,B38,B45,B47,B51,B58,B64,B70,B71,B77,B8,B82,B83,B87,B93,B98,B99,C1,C10,C11,C13,C18,C19,C20,C21,C22,C23,C25,C28,C29,C34,C37,C39,C40,C42,C43,C5,C51,C53,C57,C58,C61,C69,C7,C76,C78,C79,C83,C87,D3,D6,D8 |
Chr6:8036779 |
C |
CG |
1bp_insertion | frameshift_variant | 68 | A14,A16,A2,A22,A8,B10,B100,B101,B104,B105,B106,B11,B113,B120,B127,B128,B133,B135,B139,B14,B20,B29,B3,B38,B45,B47,B58,B64,B70,B71,B77,B8,B83,B87,B93,B98,B99,C1,C10,C11,C13,C18,C19,C20,C21,C22,C23,C25,C28,C29,C34,C39,C40,C43,C5,C51,C57,C58,C61,C69,C7,C76,C78,C79,C83,C87,D3,D6 |
Chr6:8036881 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C85 |
Chr6:8036987 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C85 |
Chr6:8037079 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B2,C16 |
Chr6:8037098 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B2 |
Chr6:8037645 |
CT |
C |
1bp_deletion | frameshift_variant | 2 | B112,B46 |
Chr6:8037645 |
CT |
C |
1bp_deletion | CDS_variant | 2 | B112,B46 |
Chr6:8037912 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B2,C16,C52 |
Chr6:8038139 |
AG |
A |
1bp_deletion | frameshift_variant | 1 | D2 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057768183.1PF14223
Retrotran_gag_2 41-116 aa
PF12796
Ank_2 144-236 aa
PF12796
Ank_2 179-272 aa
PF00023
Ank 211-236 aa
PF13962
PGG 590-703 aa
XP_057768184.1PF14223
Retrotran_gag_2 41-116 aa
PF12796
Ank_2 144-236 aa
PF12796
Ank_2 179-267 aa
PF13962
PGG 559-672 aa
XP_057768185.1PF12796
Ank_2 31-124 aa
PF00023
Ank 63-88 aa
PF13606
Ank_3 63-90 aa
PF13962
PGG 442-555 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057768183.1 |
Pfam | PF14223 |
Retrotran_gag_2 | Domain | 41 | 116 | 3.8e-10 | 40.5 | gag-polypeptide of LTR copia-type |
XP_057768183.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 144 | 236 | 5.2e-18 | 66.1 | Ankyrin repeats (3 copies) |
XP_057768183.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 179 | 272 | 5.2e-18 | 66.1 | Ankyrin repeats (3 copies) |
XP_057768183.1 |
Pfam | PF00023 |
Ank | Repeat | 211 | 236 | 0.00032 | 21.6 | Ankyrin repeat |
XP_057768183.1 |
Pfam | PF13962 |
PGG | Domain | 590 | 703 | 2.5e-26 | 92.5 | Domain of unknown function |
XP_057768184.1 |
Pfam | PF14223 |
Retrotran_gag_2 | Domain | 41 | 116 | 3.5e-10 | 40.6 | gag-polypeptide of LTR copia-type |
XP_057768184.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 144 | 236 | 1.1e-17 | 65.0 | Ankyrin repeats (3 copies) |
XP_057768184.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 179 | 267 | 1.1e-17 | 65.0 | Ankyrin repeats (3 copies) |
XP_057768184.1 |
Pfam | PF13962 |
PGG | Domain | 559 | 672 | 2.3e-26 | 92.6 | Domain of unknown function |
XP_057768185.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 31 | 124 | 2.5e-14 | 54.3 | Ankyrin repeats (3 copies) |
XP_057768185.1 |
Pfam | PF00023 |
Ank | Repeat | 63 | 88 | 0.00018 | 22.3 | Ankyrin repeat |
XP_057768185.1 |
Pfam | PF13606 |
Ank_3 | Repeat | 63 | 90 | 3.4e-08 | 33.8 | Ankyrin repeat |
XP_057768185.1 |
Pfam | PF13962 |
PGG | Domain | 442 | 555 | 1.7e-26 | 93.0 | Domain of unknown function |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。