当前解析结果
SmilChr01G002945| 统一新 Gene ID | SmilChr01G002945 |
|---|---|
| 名称 | SmilChr01G002945 |
| 描述 | lupeol synthase-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 48288240 - 48296978 / + |
| NCBI Gene ID | LOC130988388 |
|---|---|
| GeneID | 130988388 |
| locus_tag | - |
| NCBI Name | LOC130988388 |
| 原始查询 | LOC130988388 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | lupeol synthase-like |
| 产物 | lupeol synthase-like |
| Arabidopsis | AT2G07050 (CAS1)cycloartenol synthase 1 [Source:NCBI gene (formerly Entrezgene);Acc:815275] identity=60; qcov=0.999; evalue=0; confidence=high |
| Rice | Os02g0139700 (OsOSC2)- identity=60.1; qcov=1; evalue=0; confidence=high |
| GO | GO:0005811 (lipid droplet); GO:0016104 (triterpenoid biosynthetic process); GO:0016866 (intramolecular transferase activity) |
| KEGG | smil00909 (Sesquiterpenoid and triterpenoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00432 (Prenyltrans); PF13243 (SQHop_cyclase_C); PF13249 (SQHop_cyclase_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130988388 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 0.80000 | XP_057768199.1 |
| 2 | Peroxisome | 过氧化物酶体 | 0.40000 | XP_057768199.1 |
| 3 | Mitochondrion | 线粒体 | 0.20000 | XP_057768199.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057768199.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057768199.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:48290852 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B27 |
Chr1:48290867 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C15 |
Chr1:48291072 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B138 |
Chr1:48291376 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B30,C19,C41,C59 |
Chr1:48291394 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C2,D10 |
Chr1:48291423 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B59 |
Chr1:48291455 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B7,C45 |
Chr1:48293067 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B139 |
Chr1:48293087 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B10,B11,B5,C27 |
Chr1:48293134 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B26,B40,C68 |
Chr1:48293381 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B14,B57 |
Chr1:48293388 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B32 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057768199.1PF13249
SQHop_cyclase_N 99-354 aa
PF13243
SQHop_cyclase_C 415-751 aa
PF00432
Prenyltrans 508-663 aa
PF00432
Prenyltrans 619-719 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057768199.1 |
Pfam | PF13249 |
SQHop_cyclase_N | Repeat | 99 | 354 | 4.1e-39 | 135.2 | Squalene-hopene cyclase N-terminal domain |
XP_057768199.1 |
Pfam | PF13243 |
SQHop_cyclase_C | Repeat | 415 | 751 | 7.7e-59 | 200.0 | Squalene-hopene cyclase C-terminal domain |
XP_057768199.1 |
Pfam | PF00432 |
Prenyltrans | Repeat | 508 | 663 | 1.8e-07 | 31.6 | Prenyltransferase alpha-alpha toroid domain |
XP_057768199.1 |
Pfam | PF00432 |
Prenyltrans | Repeat | 619 | 719 | 1.8e-07 | 31.6 | Prenyltransferase alpha-alpha toroid domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。