当前解析结果
SmilChr06G000866| 统一新 Gene ID | SmilChr06G000866 |
|---|---|
| 名称 | SmilChr06G000866 |
| 描述 | myosin-17-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 8180435 - 8200444 / - |
| NCBI Gene ID | LOC130988400 |
|---|---|
| GeneID | 130988400 |
| locus_tag | - |
| NCBI Name | LOC130988400 |
| 原始查询 | LOC130988400 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | myosin-17-like |
| 产物 | myosin-17-like |
| Arabidopsis | AT5G20490 (XIK)myosin family protein with Dil [Source:NCBI gene (formerly Entrezgene);Acc:832171] identity=81; qcov=0.999; evalue=0; confidence=high |
| Rice | Os03g0686300- identity=78.2; qcov=0.996; evalue=0; confidence=high |
| GO | GO:0000146 (microfilament motor activity); GO:0005524 (ATP binding); GO:0005737 (cytoplasm); GO:0007015 (actin filament organization); GO:0015629 (actin cytoskeleton); GO:0016459 (myosin complex); GO:0030050 (vesicle transport along actin filament); GO:0031982 (vesicle); GO:0051015 (actin filament binding) |
| KEGG | smil04814 (Motor proteins - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00063 (Myosin_head); PF00612 (IQ); PF01843 (DIL); PF02736 (Myosin_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130988400 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057768207.1 |
| 2 | Cell membrane | 细胞膜 | 0.80000 | XP_057768207.1 |
| 3 | Clathrin-coated vesicle | Clathrin-coated vesicle | 0.20000 | XP_057768207.1 |
| 4 | Phragmoplast | Phragmoplast | 0.20000 | XP_057768207.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057768207.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:8180987 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B137,C4,C48 |
Chr6:8180990 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B106,B50 |
Chr6:8183055 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D3 |
Chr6:8183169 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B72 |
Chr6:8183295 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B47 |
Chr6:8183906 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D3 |
Chr6:8185139 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B10,B113 |
Chr6:8185863 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B101 |
Chr6:8185865 |
G |
A |
EMS_canonical_SNV | stop_gained | 2 | B10,B113 |
Chr6:8185865 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B10,B113 |
Chr6:8186036 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr6:8189242 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D3 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057768207.1PF02736
Myosin_N 7-55 aa
PF00063
Myosin_head 64-720 aa
PF00612
IQ 737-755 aa
PF00612
IQ 785-804 aa
PF00612
IQ 832-852 aa
PF00612
IQ 856-875 aa
PF01843
DIL 1348-1452 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057768207.1 |
Pfam | PF02736 |
Myosin_N | Domain | 7 | 55 | 7.8e-10 | 39.0 | Myosin N-terminal SH3-like domain |
XP_057768207.1 |
Pfam | PF00063 |
Myosin_head | Domain | 64 | 720 | 4.8e-257 | 855.4 | Myosin head (motor domain) |
XP_057768207.1 |
Pfam | PF00612 |
IQ | Motif | 737 | 755 | 5.4e-13 | 48.2 | IQ calmodulin-binding motif |
XP_057768207.1 |
Pfam | PF00612 |
IQ | Motif | 785 | 804 | 5.4e-13 | 48.2 | IQ calmodulin-binding motif |
XP_057768207.1 |
Pfam | PF00612 |
IQ | Motif | 832 | 852 | 5.4e-13 | 48.2 | IQ calmodulin-binding motif |
XP_057768207.1 |
Pfam | PF00612 |
IQ | Motif | 856 | 875 | 5.4e-13 | 48.2 | IQ calmodulin-binding motif |
XP_057768207.1 |
Pfam | PF01843 |
DIL | Repeat | 1348 | 1452 | 3.3e-30 | 105.1 | DIL domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。