Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000897`

染色体: Chr06 坐标: 8473315-8478439 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000897`
名称	SmilChr06G000897
描述	telomere repeat-binding factor 4-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	8473315 - 8478439 / `-`

ID 对照

NCBI Gene ID	`LOC130988431`
GeneID	`130988431`
locus_tag	`-`
NCBI Name	`LOC130988431`
原始查询	`LOC130988431`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	telomere repeat-binding factor 4-like
产物	telomere repeat-binding factor 4-like
Arabidopsis	`AT1G17520` (AT1G17520) Homeodomain-like/winged-helix DNA-binding family protein [Source:NCBI gene (formerly Entrezgene);Acc:838326] identity=47.9; qcov=1.04; evalue=1.97e-69; confidence=high
Rice	`Os01g0708000` (myb28) - identity=43.9; qcov=1.02; evalue=4.34e-63; confidence=medium
GO	GO:0000786 (nucleosome); GO:0003691 (double-stranded telomeric DNA binding); GO:0006334 (nucleosome assembly)
KEGG	-
Pfam	PF00249 (Myb_DNA-binding); PF00538 (Linker_histone); PF13921 (Myb_DNA-bind_6)
InterPro	-
eggNOG	-
NR	GeneID:130988431

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057768244.1`
2	Chromosome	染色体	0.00000	`XP_057768244.1`
3	Centromere	着丝粒	0.00000	`XP_057768244.1`
4	Chromatin	染色质	0.00000	`XP_057768244.1`
5	Telomere	端粒	0.00000	`XP_057768244.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:8473487`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B131,B37,B90,B92
`Chr6:8473581`	`TA`	`T`	1bp_deletion	frameshift_variant	2	B104,B107
`Chr6:8473581`	`TA`	`T`	1bp_deletion	CDS_variant	2	B104,B107
`Chr6:8473657`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B10,B106,B52,B7
`Chr6:8473843`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr6:8477288`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A9,C73
`Chr6:8478091`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C16,C52
`Chr6:8478094`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B136
`Chr6:8478184`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A18,B135,B56,B96,C73

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057768244.1

295 aa

148

295

Myb_DNA-binding

Myb_DNA-bind_6

Linker_histone

PF00249 Myb_DNA-binding 5-56 aa PF13921 Myb_DNA-bind_6 8-57 aa PF00538 Linker_histone 121-179 aa

XP_057768245.1

279 aa

140

279

Myb_DNA-binding

Myb_DNA-bind_6

Linker_histone

PF00249 Myb_DNA-binding 5-56 aa PF13921 Myb_DNA-bind_6 8-57 aa PF00538 Linker_histone 121-179 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057768244.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	5	56	6.7e-09	36.5	Myb-like DNA-binding domain
`XP_057768244.1`	Pfam	`PF13921`	Myb_DNA-bind_6	Domain	8	57	1.1e-06	29.4	Myb-like DNA-binding domain
`XP_057768244.1`	Pfam	`PF00538`	Linker_histone	Domain	121	179	7.1e-11	42.9	linker histone H1 and H5 family
`XP_057768245.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	5	56	6.1e-09	36.6	Myb-like DNA-binding domain
`XP_057768245.1`	Pfam	`PF13921`	Myb_DNA-bind_6	Domain	8	57	1e-06	29.5	Myb-like DNA-binding domain
`XP_057768245.1`	Pfam	`PF00538`	Linker_histone	Domain	121	179	6.4e-11	43.0	linker histone H1 and H5 family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057912262.1
AATTTGATTGTACGAAAAACTCAAGCAACACACTATTCCGCCCAAGTTTGAAGTATCTATGAAATCACAATTCCCAATTGACGCTAGAAAATGGGATGAAAACCGAAGACGTAAACACTGTAGATCCAATTTGGGCAAAAGCTTCTTCCAATTCTCACATTTCCCGGGCGGCCACTCCTTATAATTACTAGCAGCGCCGCCGCACCCTCCTCCCTTATTCGCCGTTGAGCTCGGGGACAATCGAATGGGCAATCCGAAGC...

XM_057912261.1
ACACACTATTCCGCCCAAGTTTGAAGTATCTATGAAATCACAATTCCCAATTGACGCTAGAAAATGGGATGAAAACCGAAGACGTAAACACTGTAGATCCAATTTGGGCAAAAGCTTCTTCCAATTCTCACATTTCCCGGGCGGCCACTCCTTATAATTACTAGCAGCGCCGCCGCACCCTCCTCCCTTATTCGCCGTTGAGCTCGGGGACAATCGAATGGGCAATCCGAAGCAGAAGTGGACCTCCGAGGAGGAGGAAG...

CDS

2 records

下载 CDS FASTA

LOC130988431
ATGGGCAATCCGAAGCAGAAGTGGACCTCCGAGGAGGAGGAAGCGCTGCGCGCCGGCGTAGCGAAGCACGGCGCTGGAAAGTGGAAAAATATTCAGAGAGACCCCGAATTCAACCACCTCCTCTTCTCTCGCTCCAACATTGACCTCAAGGATAAATGGCGGAACTTGAGTGTAGCAAACGGCCAAGGGCCTAGAGATAAATCAAAGACACCAAAAACAAAGGCGAGCCCTGCTGAATCCCCTGCAACTCCACTCCCTGC...

Protein

2 records

下载 Protein FASTA

XP_057768244.1
MGNPKQKWTSEEEEALRAGVAKHGAGKWKNIQRDPEFNHLLFSRSNIDLKDKWRNLSVANGQGPRDKSKTPKTKASPAESPATPLPAAQTSAIVPYSQDKSADVVMLDSSKPLPEGNSAAKYNAMIFEALSTLKEPNGSDSGAIATYIEQRQEVPQNFKRALSSRLRRLVQQDKLEKVQNCYRIKNKAQLDTRIPITRPKELQPPRQVQSIGYLGNTVEEAAVSAAYKIAEAENKSFVAAEAVKEAERVSMMAEDMESLL...

XP_057768245.1
MGNPKQKWTSEEEEALRAGVAKHGAGKWKNIQRDPEFNHLLFSRSNIDLKDKWRNLSVANGQGPRDKSKTPKTKASPAESPATPLPAAQTSAIVPYSQDKSADVVMLDSSKPLPEGNSAAKYNAMIFEALSTLKEPNGSDSGAIATYIEQRQEVPQNFKRALSSRLRRLVQQDKLEKVQNCYRIKNKAQLDTRIPITRPKELQPPRQVQSIGYLGNTVEEAAVSAAYKIAEAENKSFVAAEAVKEAERVSMMAEDMESLL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器