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Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G002948

染色体: Chr01 坐标: 48349556-48358726 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G002948
名称SmilChr01G002948
描述cycloartenol Synthase-like
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向48349556 - 48358726 / -

ID 对照

NCBI Gene IDLOC130988438
GeneID130988438
locus_tag-
NCBI NameLOC130988438
原始查询LOC130988438

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述cycloartenol Synthase-like
产物cycloartenol Synthase-like
ArabidopsisAT2G07050 (CAS1)
cycloartenol synthase 1 [Source:NCBI gene (formerly Entrezgene);Acc:815275]
identity=79.9; qcov=1; evalue=0; confidence=high
RiceOs02g0139700 (OsOSC2)
-
identity=75.1; qcov=0.999; evalue=0; confidence=high
GOGO:0005811 (lipid droplet); GO:0016104 (triterpenoid biosynthetic process); GO:0016866 (intramolecular transferase activity)
KEGGsmil00100 (Steroid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
PfamPF00432 (Prenyltrans); PF13243 (SQHop_cyclase_C); PF13249 (SQHop_cyclase_N)
InterPro-
eggNOG-
NRGeneID:130988438

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Endoplasmic reticulum 内质网 0.80000 XP_057768259.1
2 Endoplasmic reticulum membrane 内质网膜 0.80000 XP_057768259.1
3 Mitochondrion 线粒体 0.20000 XP_057768259.1
4 Peroxisome 过氧化物酶体 0.20000 XP_057768259.1
5 Nucleus 细胞核 0.00000 XP_057768259.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:48350075 C T EMS_canonical_SNV CDS_variant 2 A21,B134
Chr1:48350356 G A EMS_canonical_SNV CDS_variant 1 C31
Chr1:48350975 G A EMS_canonical_SNV CDS_variant 3 B104,C2,D10
Chr1:48351316 G A EMS_canonical_SNV CDS_variant 3 A24,A7,C52
Chr1:48353581 G A EMS_canonical_SNV CDS_variant 1 B55
Chr1:48353701 G A EMS_canonical_SNV CDS_variant 4 B126,C6,C63,C67
Chr1:48354851 C T EMS_canonical_SNV CDS_variant 2 B104,D10
Chr1:48356277 G A EMS_canonical_SNV CDS_variant 1 B59
Chr1:48356328 G A EMS_canonical_SNV CDS_variant 2 B12,B26
Chr1:48356587 C T EMS_canonical_SNV CDS_variant 1 B55
Chr1:48356850 C T EMS_canonical_SNV CDS_variant 4 B26,B40,C32,C68
Chr1:48357883 C T EMS_canonical_SNV CDS_variant 3 B88,C37,C82

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057768259.1
756 aa
N
1
378
756
SQHop_cyclase_N
Prenyltrans
SQHop_cyclase_C
Prenyltrans
Prenyltrans
C
PF13249 SQHop_cyclase_N 99-396 aa PF00432 Prenyltrans 101-189 aa PF13243 SQHop_cyclase_C 413-750 aa PF00432 Prenyltrans 508-606 aa PF00432 Prenyltrans 590-731 aa
XP_057768264.1
756 aa
N
1
378
756
SQHop_cyclase_N
Prenyltrans
SQHop_cyclase_C
Prenyltrans
Prenyltrans
C
PF13249 SQHop_cyclase_N 99-396 aa PF00432 Prenyltrans 101-189 aa PF13243 SQHop_cyclase_C 413-750 aa PF00432 Prenyltrans 508-606 aa PF00432 Prenyltrans 590-731 aa
XP_057768270.1
756 aa
N
1
378
756
SQHop_cyclase_N
Prenyltrans
SQHop_cyclase_C
Prenyltrans
Prenyltrans
C
PF13249 SQHop_cyclase_N 99-396 aa PF00432 Prenyltrans 101-189 aa PF13243 SQHop_cyclase_C 413-750 aa PF00432 Prenyltrans 508-606 aa PF00432 Prenyltrans 590-731 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057768259.1 Pfam PF13249 SQHop_cyclase_N Repeat 99 396 2.7e-42 145.6 Squalene-hopene cyclase N-terminal domain
XP_057768259.1 Pfam PF00432 Prenyltrans Repeat 101 189 6.6e-10 39.6 Prenyltransferase alpha-alpha toroid domain
XP_057768259.1 Pfam PF13243 SQHop_cyclase_C Repeat 413 750 5.8e-60 203.7 Squalene-hopene cyclase C-terminal domain
XP_057768259.1 Pfam PF00432 Prenyltrans Repeat 508 606 6.6e-10 39.6 Prenyltransferase alpha-alpha toroid domain
XP_057768259.1 Pfam PF00432 Prenyltrans Repeat 590 731 6.6e-10 39.6 Prenyltransferase alpha-alpha toroid domain
XP_057768264.1 Pfam PF13249 SQHop_cyclase_N Repeat 99 396 2.7e-42 145.6 Squalene-hopene cyclase N-terminal domain
XP_057768264.1 Pfam PF00432 Prenyltrans Repeat 101 189 6.6e-10 39.6 Prenyltransferase alpha-alpha toroid domain
XP_057768264.1 Pfam PF13243 SQHop_cyclase_C Repeat 413 750 5.8e-60 203.7 Squalene-hopene cyclase C-terminal domain
XP_057768264.1 Pfam PF00432 Prenyltrans Repeat 508 606 6.6e-10 39.6 Prenyltransferase alpha-alpha toroid domain
XP_057768264.1 Pfam PF00432 Prenyltrans Repeat 590 731 6.6e-10 39.6 Prenyltransferase alpha-alpha toroid domain
XP_057768270.1 Pfam PF13249 SQHop_cyclase_N Repeat 99 396 2.7e-42 145.6 Squalene-hopene cyclase N-terminal domain
XP_057768270.1 Pfam PF00432 Prenyltrans Repeat 101 189 6.6e-10 39.6 Prenyltransferase alpha-alpha toroid domain
XP_057768270.1 Pfam PF13243 SQHop_cyclase_C Repeat 413 750 5.8e-60 203.7 Squalene-hopene cyclase C-terminal domain
XP_057768270.1 Pfam PF00432 Prenyltrans Repeat 508 606 6.6e-10 39.6 Prenyltransferase alpha-alpha toroid domain
XP_057768270.1 Pfam PF00432 Prenyltrans Repeat 590 731 6.6e-10 39.6 Prenyltransferase alpha-alpha toroid domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057912281.1
GCTCCAAATTGGAGTGATTCAGTCAAATACCACTGAGCTCAGCACGGCTTGTTTCCCACTCATTTTAAAACACAACGGAGTGCGTAATATTTTACTGGAAGAATACATCGTCTCCTCTCTCTCTCTCTCTCTAGATCAGATGAGAAGAGAGCTAAATGATATAAAGAAGGGCATATAGAACATTCAGAGACTGAAGAGGATATAGAGGAGAAAGTGATAATGTGGAAGCTGAAATTTGCGGATGGATCAAGCCCGTGGTT...
XM_057912276.1
GGAGTGATTCAGTCAAATACCACTGAGCTCAGCACGGCTTGTTTCCCACTCATTTTAAAACACAACGGAGTGCGTAATATTTTACTGGAAGAATACATCGTCTCCTCTCTCTCTCTCTCTCTAGATCAGATGAGAAGGTGCTTGCTCTAAACCATCGTTTAATTCATCGGTTGTAGCAGAGCTAAATGATATAAAGAAGGGCATATAGAACATTCAGAGACTGAAGAGGATATAGAGGAGAAAGTGATAATGTGGAAGCT...

CDS

3 records

下载 CDS FASTA
LOC130988438
ATGTGGAAGCTGAAATTTGCGGATGGATCAAGCCCGTGGTTGCGCTCTTTAAATGGACATGTGGGCCGCCAAACCTGGGAGTTTGATCCTAGTCTTGGGTCCCCCGAGGAGTTGGCTGAGATTGAGAAACTCCGAGAGCAATTTCGCAATCATCGTTTTGAAAAGCGTCATTCTGCTGATCTTCTCATGAGACTTCAATTTTCGAAGGAGAGCCCTGTTACCAATGATTTGCCCCAAGTTAAAGTGAAGGATGTGGAAGA...
LOC130988438
ATGTGGAAGCTGAAATTTGCGGATGGATCAAGCCCGTGGTTGCGCTCTTTAAATGGACATGTGGGCCGCCAAACCTGGGAGTTTGATCCTAGTCTTGGGTCCCCCGAGGAGTTGGCTGAGATTGAGAAACTCCGAGAGCAATTTCGCAATCATCGTTTTGAAAAGCGTCATTCTGCTGATCTTCTCATGAGACTTCAATTTTCGAAGGAGAGCCCTGTTACCAATGATTTGCCCCAAGTTAAAGTGAAGGATGTGGAAGA...

Protein

3 records

下载 Protein FASTA
XP_057768259.1
MWKLKFADGSSPWLRSLNGHVGRQTWEFDPSLGSPEELAEIEKLREQFRNHRFEKRHSADLLMRLQFSKESPVTNDLPQVKVKDVEDITEEKVANTLRRAISFHSTLQAHDGHWPGDYGGPMFLLPGLVITLSITGALNAILSKEHKREICRYLYNHQNRDGGWGLHIEGPSTMFGSVLTYVTLRLLGEGANDGDGSMEKGRDWILNHGGATAITSWGKMWLSVLGVFEWSGNNPLPPEIWVLPYILPFHPGRMWCHCRM...
XP_057768264.1
MWKLKFADGSSPWLRSLNGHVGRQTWEFDPSLGSPEELAEIEKLREQFRNHRFEKRHSADLLMRLQFSKESPVTNDLPQVKVKDVEDITEEKVANTLRRAISFHSTLQAHDGHWPGDYGGPMFLLPGLVITLSITGALNAILSKEHKREICRYLYNHQNRDGGWGLHIEGPSTMFGSVLTYVTLRLLGEGANDGDGSMEKGRDWILNHGGATAITSWGKMWLSVLGVFEWSGNNPLPPEIWVLPYILPFHPGRMWCHCRM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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