Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr06G000915

染色体: Chr06 坐标: 8674613-8678461 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr06G000915
名称SmilChr06G000915
描述uncharacterized SmilChr06G000915
染色体 / SeqIDChr06 / NC_080392.1
坐标与链方向8674613 - 8678461 / +

ID 对照

NCBI Gene IDLOC130988449
GeneID130988449
locus_tag-
NCBI NameLOC130988449
原始查询LOC130988449

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:835787]; symbol=AT5G56850; hit=AT5G56850; species=arabidopsis; confidence=weak
产物uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:835787]; symbol=AT5G56850; hit=AT5G56850; species=arabidopsis; confidence=weak
ArabidopsisAT5G56850 (AT5G56850)
uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:835787]
identity=51.6; qcov=0.213; evalue=1.06e-33; confidence=weak
RiceOs05g0232200
-
identity=40.2; qcov=0.166; evalue=1.75e-16; confidence=weak
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:130988449

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 0.60000 XP_057768271.1
2 Nucleus membrane 核膜 0.40000 XP_057768271.1
3 Nucleus 细胞核 0.20000 XP_057768271.1
4 Endoplasmic reticulum 内质网 0.20000 XP_057768271.1
5 Endoplasmic reticulum membrane 内质网膜 0.20000 XP_057768283.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr6:8675575 G A EMS_canonical_SNV CDS_variant 1 B95
Chr6:8676118 G A EMS_canonical_SNV CDS_variant 2 B23,D3
Chr6:8676386 G A EMS_canonical_SNV CDS_variant 5 A14,B23,C83,D11,D3
Chr6:8676392 G A EMS_canonical_SNV CDS_variant 2 B104,B91
Chr6:8676501 G A EMS_canonical_SNV CDS_variant 1 C20
Chr6:8676519 G A EMS_canonical_SNV CDS_variant 3 A14,C83,D3
Chr6:8676693 G A EMS_canonical_SNV CDS_variant 5 B113,B140,B78,C17,C61
Chr6:8676707 A AAG 2bp_insertion frameshift_variant 10 B101,B125,B126,B17,B29,B95,C18,C44,C55,C87
Chr6:8676810 C T EMS_canonical_SNV CDS_variant 1 C37
Chr6:8676811 G A EMS_canonical_SNV CDS_variant 5 B113,B140,B78,C17,C61
Chr6:8676862 G A EMS_canonical_SNV CDS_variant 2 B10,B107
Chr6:8676876 C T EMS_canonical_SNV CDS_variant 2 B10,B107

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

19 records

下载 cDNA FASTA
XM_057912288.1
GTTTTTTTGTTACTACTACACAAGTGAGAAATAATTTCCCATAACATTTGTTTTTTAGCAGAAAATAATTTCTCATAACATGCAAGTTCAAGAACTAGATTTTTCCTAGTTTACATTGAGCCTTCAGCCAAATCCAATAATACAATAGCTACAAGATATTTAGAGTTGAATAAATCCCTTTGAAGAGGTGAAGTGAGACAAAAGGAGAGATTTTGGCTCAACCCTTTTGAGGTGGTTAACAAATTTATGGACCCCATCAT...
XM_057912290.1
GTTTTTTTGTTACTACTACACAAGTGAGAAATAATTTCCCATAACATTTGTTTTTTAGCAGAAAATAATTTCTCATAACATGCAAGTTCAAGAACTAGATTTTTCCTAGTTTACATTGAGCCTTCAGCCAAATCCAATAATACAATAGCTACAAGATATTTAGAGTTGAATAAATCCCTTTGAAGAGGTGAAGTGAGACAAAAGGAGAGATTTTGGCTCAACCCTTTTGAGGTGGTTAACAAATTTATGGACCCCATCAT...

CDS

19 records

下载 CDS FASTA
LOC130988449
ATGCCAGGAACTATACATGTTACAGTTGTTGAATTCAAGGGCGTCTCATCTTCACCAAAGCCTTCTGCAAAATCCCTCAAAGTTTCGATGGGGAAGAGGCAGTATCAGACTTGGGACAAAGGGGACTTCTCATTCCCCATAACGAGAATCGGTGAAGACATAGTTGTTGCTCTTCTTGATGCTGGGGGGAATGAGATTGCTCATCAAGATATTGGGACAATGCAAGTCATTGAGAAGGGATCTTGGGATGAGGTTTTCTT...
LOC130988449
ATGCCAGGAACTATACATGTTACAGTTGTTGAATTCAAGGGCGTCTCATCTTCACCAAAGCCTTCTGCAAAATCCCTCAAAGTTTCGATGGGGAAGAGGCAGTATCAGACTTGGGACAAAGGGGACTTCTCATTCCCCATAACGAGAATCGGTGAAGACATAGTTGTTGCTCTTCTTGATGCTGGGGGGAATGAGATTGCTCATCAAGATATTGGGACAATGCAAGTCATTGAGAAGGGATCTTGGGATGAGGTTTTCTT...

Protein

19 records

下载 Protein FASTA
XP_057768271.1
MPGTIHVTVVEFKGVSSSPKPSAKSLKVSMGKRQYQTWDKGDFSFPITRIGEDIVVALLDAGGNEIAHQDIGTMQVIEKGSWDEVFFINGGGHVHLKLHFTLSEEDRSRIRVMRESAMKKKLETNPNIKLRFLEYFTSTAESAETSMKDGQKVSASTKGFVEIDLTSPEVEASRAGSSPASAASSAASLSSHRMGGGAVVDSGIPNATDGIQDAPPSSHVEHKIDVESARVADVGIQTPRLAGVGSDNGDGPSSEMSSLV...
XP_057768272.1
MPGTIHVTVVEFKGVSSSPKPSAKSLKVSMGKRQYQTWDKGDFSFPITRIGEDIVVALLDAGGNEIAHQDIGTMQVIEKGSWDEVFFINGGGHVHLKLHFTLSEEDRSRIRVMRESAMKKKLETNPNIKLRFLEYFTSTAESAETSMKDGQKVSASTKGFVEIDLTSPEVEASRAGSSPASAASSAASLSSHRMGGGAVVDSGIPNATDGIQDAPPSSHVEHKIDVESARVADVGIQTPRLAGVGSDNGDGPSSEMSSLV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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