当前解析结果
SmilChr06G000936| 统一新 Gene ID | SmilChr06G000936 |
|---|---|
| 名称 | SmilChr06G000936 |
| 描述 | ATP-dependent DNA helicase Q-like 3 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 8953676 - 8962578 / - |
| NCBI Gene ID | LOC130988469 |
|---|---|
| GeneID | 130988469 |
| locus_tag | - |
| NCBI Name | LOC130988469 |
| 原始查询 | LOC130988469 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ATP-dependent DNA helicase Q-like 3 |
| 产物 | ATP-dependent DNA helicase Q-like 3 |
| Arabidopsis | AT4G35740 (RecQl3)DEAD/DEAH box RNA helicase family protein [Source:NCBI gene (formerly Entrezgene);Acc:829727] identity=62.8; qcov=0.985; evalue=0; confidence=high |
| Rice | Os02g0780800- identity=73; qcov=0.443; evalue=9.12e-171; confidence=low |
| GO | GO:0000724 (double-strand break repair via homologous recombination); GO:0003676 (nucleic acid binding); GO:0005524 (ATP binding); GO:0005694 (chromosome); GO:0005737 (cytoplasm); GO:0006268 (GO:0006268); GO:0009378 (four-way junction helicase activity); GO:0043138 (3'-5' DNA helicase activity) |
| KEGG | smil03440 (Homologous recombination - Salvia miltiorrhiza (redroot sage)); smil03460 (Fanconi anemia pathway - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00270 (DEAD); PF00271 (Helicase_C); PF16124 (RecQ_Zn_bind) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130988469 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057768312.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057768312.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057768312.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057768312.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057768312.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:8954216 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B61,B72,C39,C56 |
Chr6:8954410 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A2 |
Chr6:8958736 |
C |
CTT |
2bp_insertion | frameshift_variant | 6 | A10,B11,B75,C27,C41,C71 |
Chr6:8958739 |
GCA |
G |
2bp_deletion | frameshift_variant | 51 | A15,A18,A23,B10,B100,B102,B114,B119,B125,B132,B134,B18,B19,B3,B30,B36,B42,B43,B45,B48,B55,B58,B70,B73,B79,B87,B9,C24,C28,C3,C33,C34,C35,C38,C46,C51,C52,C54,C56,C65,C7,C72,C74,C77,C79,C81,C84,D4,D5,D8,D9 |
Chr6:8958880 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A23,B26,C40 |
Chr6:8958924 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A14,A2 |
Chr6:8959397 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr6:8961010 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B100,C87 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057768312.1PF00270
DEAD 40-205 aa
PF00271
Helicase_C 245-350 aa
PF16124
RecQ_Zn_bind 364-435 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057768312.1 |
Pfam | PF00270 |
DEAD | Domain | 40 | 205 | 1.8e-25 | 90.3 | DEAD/DEAH box helicase |
XP_057768312.1 |
Pfam | PF00271 |
Helicase_C | Domain | 245 | 350 | 6.1e-19 | 69.0 | Helicase conserved C-terminal domain |
XP_057768312.1 |
Pfam | PF16124 |
RecQ_Zn_bind | Domain | 364 | 435 | 7.3e-12 | 46.6 | RecQ zinc-binding |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。