Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G000786`

染色体: Chr01 坐标: 17138027-17138815 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G000786`
名称	SmilChr01G000786
描述	uncharacterized SmilChr01G000786
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	17138027 - 17138815 / `+`

ID 对照

NCBI Gene ID	`LOC130988475`
GeneID	`130988475`
locus_tag	`-`
NCBI Name	`LOC130988475`
原始查询	`LOC130988475`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	DNA binding protein [Source:NCBI gene (formerly Entrezgene);Acc:823922]; symbol=AT3G47680; hit=AT3G47680; species=arabidopsis; confidence=low
产物	DNA binding protein [Source:NCBI gene (formerly Entrezgene);Acc:823922]; symbol=AT3G47680; hit=AT3G47680; species=arabidopsis; confidence=low
Arabidopsis	`AT3G47680` (AT3G47680) DNA binding protein [Source:NCBI gene (formerly Entrezgene);Acc:823922] identity=33.7; qcov=0.374; evalue=2.61e-12; confidence=low
Rice	`Os12g0228500` - identity=23.8; qcov=0.931; evalue=8.42e-10; confidence=weak
GO	-
KEGG	-
Pfam	PF14303 (NAM-associated)
InterPro	-
eggNOG	-
NR	GeneID:130988475

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057768360.1`
2	Chromosome	染色体	0.00000	`XP_057768360.1`
3	Centromere	着丝粒	0.00000	`XP_057768360.1`
4	Chromatin	染色质	0.00000	`XP_057768360.1`
5	Telomere	端粒	0.00000	`XP_057768360.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:17138049`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B73,B81
`Chr1:17138050`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C40
`Chr1:17138054`	`G`	`GAT`	2bp_insertion	frameshift_variant	2	B126,C40
`Chr1:17138054`	`G`	`GAT`	2bp_insertion	CDS_variant	2	B126,C40
`Chr1:17138064`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B122
`Chr1:17138075`	`C`	`T`	EMS_canonical_SNV	stop_gained	11	A11,A25,A3,B120,B124,B129,B135,B71,B78,B79,C7
`Chr1:17138082`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A19,B104,B52,B89
`Chr1:17138084`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B53,B71,C53
`Chr1:17138095`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	B122
`Chr1:17138095`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B122
`Chr1:17138096`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A19,B52
`Chr1:17138138`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B47,C21,C56

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057768360.1

262 aa

131

262

NAM-associated

PF14303 NAM-associated 107-242 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057768360.1`	Pfam	`PF14303`	NAM-associated	Family	107	242	8.3e-08	33.9	No apical meristem-associated C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057912377.1
ATGTCATCTTGGATCTATGCTAGCGAAGATAGCATTCGAGGAAAAAGTCAAAAAGGGGAATCGCTTTGGGCACGTGTGAATAAATTTTATCACATAACTCAAGCAGAAAATCCCAATGAGCTCAACGAGCGAAACACTGAATCAATGAAAGGTCGCTGGAAACGTCTTAATGAAAATGCAAACAAATGGGTTGCTGCTTGCAGGGAGACAAATGCTCGAAGAAGGAGTGGAATGAGCGACAACGATGTTGAGAAAGAAGC...

CDS

1 records

下载 CDS FASTA

LOC130988475
ATGTCATCTTGGATCTATGCTAGCGAAGATAGCATTCGAGGAAAAAGTCAAAAAGGGGAATCGCTTTGGGCACGTGTGAATAAATTTTATCACATAACTCAAGCAGAAAATCCCAATGAGCTCAACGAGCGAAACACTGAATCAATGAAAGGTCGCTGGAAACGTCTTAATGAAAATGCAAACAAATGGGTTGCTGCTTGCAGGGAGACAAATGCTCGAAGAAGGAGTGGAATGAGCGACAACGATGTTGAGAAAGAAGC...

Protein

1 records

下载 Protein FASTA

XP_057768360.1
MSSWIYASEDSIRGKSQKGESLWARVNKFYHITQAENPNELNERNTESMKGRWKRLNENANKWVAACRETNARRRSGMSDNDVEKEAHSIYEAGGSKFQDLVVFNEVMSKHPKWNVYDTTPIFPHASEDVDNHESGGSSKRSKTSEDGGFSVPSNPETPTSEQSTATRPIGRDKAKRKGKGKASQSESTNESVVAAEIRAMRLTRDAEAELIKTRIKLECEKLQRNAMKMKEKMLLQLLAKDHLSPEDEEMKRQLTKIVF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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