Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000943`

染色体: Chr06 坐标: 9050438-9055018 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000943`
名称	SmilChr06G000943
描述	uncharacterized SmilChr06G000943
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	9050438 - 9055018 / `+`

ID 对照

NCBI Gene ID	`LOC130988477`
GeneID	`130988477`
locus_tag	`-`
NCBI Name	`LOC130988477`
原始查询	`LOC130988477`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Regulator of Vps4 activity in the MVB pathway protein [Source:NCBI gene (formerly Entrezgene);Acc:816490]; symbol=AT2G19710; hit=AT2G19710; species=arabidopsis; confidence=low
产物	Regulator of Vps4 activity in the MVB pathway protein [Source:NCBI gene (formerly Entrezgene);Acc:816490]; symbol=AT2G19710; hit=AT2G19710; species=arabidopsis; confidence=low
Arabidopsis	`AT2G19710` (AT2G19710) Regulator of Vps4 activity in the MVB pathway protein [Source:NCBI gene (formerly Entrezgene);Acc:816490] identity=48.3; qcov=0.332; evalue=1.92e-54; confidence=low
Rice	`Os01g0706400` (P0692C11.22-2) - identity=65.5; qcov=0.137; evalue=1.88e-49; confidence=weak
GO	GO:0015031 (protein transport)
KEGG	-
Pfam	PF03398 (Ist1)
InterPro	-
eggNOG	-
NR	GeneID:130988477

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057768321.1`
2	Nucleus membrane	核膜	0.40000	`XP_057768322.1`
3	Nucleus	细胞核	0.20000	`XP_057768322.1`
4	Golgi apparatus	高尔基体	0.20000	`XP_057768322.1`
5	Chromosome	染色体	0.00000	`XP_057768321.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:9051771`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A23,B140,B26,C40,C9
`Chr6:9052569`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B84,C43,C70
`Chr6:9052696`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B65,C76
`Chr6:9052890`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C37
`Chr6:9052933`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B107
`Chr6:9053211`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C83,D5
`Chr6:9053345`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B35,B64,B92,C21,C73
`Chr6:9053791`	`G`	`GAC`	2bp_insertion	frameshift_variant	1	A3
`Chr6:9053791`	`G`	`GAC`	2bp_insertion	CDS_variant	1	A3
`Chr6:9053795`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B138,B49,B53,C70,D2
`Chr6:9053918`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D2
`Chr6:9054042`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057768321.1

944 aa

472

944

Ist1

PF03398 Ist1 24-188 aa

XP_057768322.1

868 aa

434

868

Ist1

PF03398 Ist1 1-112 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057768321.1`	Pfam	`PF03398`	Ist1	Family	24	188	1e-59	201.8	Regulator of Vps4 activity in the MVB pathway
`XP_057768322.1`	Pfam	`PF03398`	Ist1	Family	1	112	2.6e-35	122.5	Regulator of Vps4 activity in the MVB pathway

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057912338.1
TAAAAAGACATTTGAAAAAGTCAACCTAGCAGTTAAATACCCCGATTTTTTCCCTTATTACAATTTCCCCCAAATTCAATGCAAAAGCCACAAATAACTGAATACCAAACAGAGAAAAGTTATTCGCCTATGTCTGCGTTGCGAAACACGAATCCAAATACTTATCAAATAAATCCATTTTCTCTCTTTTACAAGTAATATCAGAAACTCAGTGATCATAGCCTCGAAATCCGTTCTTCTTAGAATCCAGAAATCTCAGT...

XM_057912339.1
GTCATAATTTTTTTATTTTATCATTTTCCTGCAATTGGCTATGTGTTCTGATCGAGAATCATTACGCAGAAAAAGCGTGGATATTAATTAGATCCAAATCAGACTTGTGTAGGGACCGCATAAACGTTGATCTAGAATTGACTTGTAACAGTGAAGGATAACGTTGTCTGGTTTCGGATGATAATGTTCCAAACGGCTTAAGACTAAATTAGGACACAACAAATCACAGAAGCCGAGTTGTCAGTCTTATCTGTTCAAAG...

CDS

2 records

下载 CDS FASTA

LOC130988477
ATGAAGAAATCGAAGTTTCTCAAGAGCTCAAAGGAGTTGCTCTCTCGGAGCTTCAATCCTTCCAAATGCAAGACGTCGTTGAGGCTGGCGGCGTCGCGGCTCAAGTTGTTGAGGAACAAGAAAGAAGCTCAGGTGAAGCAGACGAGGCGGGAAATATCACTCTTGCTCGAATCCGGACAAGATCAAACGGCTCGAATCCGAGTTGAGCATGTGATTAGGGAAGAGAAGATGTTGGCTGCATTTGATCTTATCGGAATCTA...

LOC130988477
ATGTTGGCTGCATTTGATCTTATCGGAATCTATTGCGAACTTATTGTTGCAAGGCTGCCTATTATTGAATCTCAAAAGATTTGCCCCATTGACCTGAAAGAGGCAATTGCAAGCGTAGTCTATGCTTCCCCGAGATGTGGAGACGTACCTGAACTTGTAGAAGTCAAGAAACAATTTACAGAGAAATACGGAAAAGATTTTGTAACTGCAGCCATAGAACTTCGTCCAGAATGTGGTGTCAGCCGTATGTTGGTTGAGAA...

Protein

2 records

下载 Protein FASTA

XP_057768321.1
MKKSKFLKSSKELLSRSFNPSKCKTSLRLAASRLKLLRNKKEAQVKQTRREISLLLESGQDQTARIRVEHVIREEKMLAAFDLIGIYCELIVARLPIIESQKICPIDLKEAIASVVYASPRCGDVPELVEVKKQFTEKYGKDFVTAAIELRPECGVSRMLVEKLSALAPDGETKTKILSTIAEEHNVKWEAKSFEQNSAPASDLLSGPTTFVKESERLPEPPRGNQLHDSTLNFTQVDHGSSPRTEVSDFNSALGGERAQ...

XP_057768322.1
MLAAFDLIGIYCELIVARLPIIESQKICPIDLKEAIASVVYASPRCGDVPELVEVKKQFTEKYGKDFVTAAIELRPECGVSRMLVEKLSALAPDGETKTKILSTIAEEHNVKWEAKSFEQNSAPASDLLSGPTTFVKESERLPEPPRGNQLHDSTLNFTQVDHGSSPRTEVSDFNSALGGERAQFFRGDSDNVPRDRQRWNMNFKDATSAAQAAAESAELASMAARAAAELSSRGRISRQSSTESHKSDDHSSRGGAPDT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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