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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr06G000984

染色体: Chr06 坐标: 9637102-9639662 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr06G000984
名称SmilChr06G000984
描述pentatricopeptide repeat-containing protein At1g73400, mitochondrial-like
染色体 / SeqIDChr06 / NC_080392.1
坐标与链方向9637102 - 9639662 / +

ID 对照

NCBI Gene IDLOC130988519
GeneID130988519
locus_tag-
NCBI NameLOC130988519
原始查询LOC130988519

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At1g73400, mitochondrial-like
产物pentatricopeptide repeat-containing protein At1g73400%2C mitochondrial-like
ArabidopsisAT1G73400 (AT1G73400)
Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843675]
identity=60.5; qcov=0.847; evalue=0; confidence=high
RiceOs02g0759500
-
identity=58.7; qcov=0.836; evalue=0; confidence=high
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:130988519

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 0.80000 XP_057768375.1
2 Chloroplast 叶绿体 0.20000 XP_057768375.1
3 Nucleus 细胞核 0.00000 XP_057768375.1
4 Chromosome 染色体 0.00000 XP_057768375.1
5 Centromere 着丝粒 0.00000 XP_057768375.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr6:9637991 G A EMS_canonical_SNV CDS_variant 1 B119
Chr6:9638012 C T EMS_canonical_SNV CDS_variant 1 C87
Chr6:9638430 G A EMS_canonical_SNV CDS_variant 1 B18
Chr6:9638515 G A EMS_canonical_SNV stop_gained 1 B110
Chr6:9638515 G A EMS_canonical_SNV CDS_variant 1 B110

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057768375.1
529 aa
N
1
264
529
PPR_2
PPR
PPR_3
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_2
PPR
TPR_24
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR
C
PF13041 PPR_2 194-241 aa PF01535 PPR 198-223 aa PF13812 PPR_3 222-274 aa PF01535 PPR 231-259 aa PF13812 PPR_3 251-314 aa PF12854 PPR_1 258-291 aa PF13041 PPR_2 264-310 aa PF01535 PPR 265-294 aa PF13041 PPR_2 300-348 aa PF01535 PPR 304-333 aa PF23276 TPR_24 305-398 aa PF13812 PPR_3 324-384 aa PF12854 PPR_1 332-363 aa PF13041 PPR_2 335-384 aa PF01535 PPR 339-364 aa PF13812 PPR_3 360-417 aa PF12854 PPR_1 369-398 aa PF13041 PPR_2 370-417 aa PF01535 PPR 373-403 aa PF12854 PPR_1 402-434 aa PF13041 PPR_2 405-452 aa PF01535 PPR 409-438 aa PF01535 PPR 444-472 aa
XP_057768376.1
529 aa
N
1
264
529
PPR_2
PPR
PPR_3
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_2
PPR
TPR_24
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR
C
PF13041 PPR_2 194-241 aa PF01535 PPR 198-223 aa PF13812 PPR_3 222-274 aa PF01535 PPR 231-259 aa PF13812 PPR_3 251-314 aa PF12854 PPR_1 258-291 aa PF13041 PPR_2 264-310 aa PF01535 PPR 265-294 aa PF13041 PPR_2 300-348 aa PF01535 PPR 304-333 aa PF23276 TPR_24 305-398 aa PF13812 PPR_3 324-384 aa PF12854 PPR_1 332-363 aa PF13041 PPR_2 335-384 aa PF01535 PPR 339-364 aa PF13812 PPR_3 360-417 aa PF12854 PPR_1 369-398 aa PF13041 PPR_2 370-417 aa PF01535 PPR 373-403 aa PF12854 PPR_1 402-434 aa PF13041 PPR_2 405-452 aa PF01535 PPR 409-438 aa PF01535 PPR 444-472 aa
XP_057768377.1
568 aa
N
1
284
568
PPR_2
PPR
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_2
PPR
TPR_24
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR
C
PF13041 PPR_2 233-280 aa PF01535 PPR 237-262 aa PF01535 PPR 270-298 aa PF13812 PPR_3 290-353 aa PF12854 PPR_1 297-330 aa PF13041 PPR_2 303-351 aa PF01535 PPR 304-333 aa PF13041 PPR_2 339-387 aa PF01535 PPR 343-372 aa PF23276 TPR_24 344-437 aa PF13812 PPR_3 363-423 aa PF12854 PPR_1 371-402 aa PF13041 PPR_2 374-423 aa PF01535 PPR 378-403 aa PF13812 PPR_3 399-456 aa PF12854 PPR_1 408-437 aa PF13041 PPR_2 409-456 aa PF01535 PPR 412-442 aa PF12854 PPR_1 441-473 aa PF13041 PPR_2 444-491 aa PF01535 PPR 448-477 aa PF01535 PPR 483-511 aa
XP_057768378.1
568 aa
N
1
284
568
PPR_2
PPR
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_2
PPR
TPR_24
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR
C
PF13041 PPR_2 233-280 aa PF01535 PPR 237-262 aa PF01535 PPR 270-298 aa PF13812 PPR_3 290-353 aa PF12854 PPR_1 297-330 aa PF13041 PPR_2 303-351 aa PF01535 PPR 304-333 aa PF13041 PPR_2 339-387 aa PF01535 PPR 343-372 aa PF23276 TPR_24 344-437 aa PF13812 PPR_3 363-423 aa PF12854 PPR_1 371-402 aa PF13041 PPR_2 374-423 aa PF01535 PPR 378-403 aa PF13812 PPR_3 399-456 aa PF12854 PPR_1 408-437 aa PF13041 PPR_2 409-456 aa PF01535 PPR 412-442 aa PF12854 PPR_1 441-473 aa PF13041 PPR_2 444-491 aa PF01535 PPR 448-477 aa PF01535 PPR 483-511 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057768375.1 Pfam PF13041 PPR_2 Repeat 194 241 1.9e-63 211.1 PPR repeat family
XP_057768375.1 Pfam PF01535 PPR Repeat 198 223 2.3e-40 134.7 PPR repeat
XP_057768375.1 Pfam PF13812 PPR_3 Repeat 222 274 4.8e-29 100.9 Pentatricopeptide repeat domain
XP_057768375.1 Pfam PF01535 PPR Repeat 231 259 2.3e-40 134.7 PPR repeat
XP_057768375.1 Pfam PF13812 PPR_3 Repeat 251 314 4.8e-29 100.9 Pentatricopeptide repeat domain
XP_057768375.1 Pfam PF12854 PPR_1 Repeat 258 291 2.7e-48 162.1 PPR repeat
XP_057768375.1 Pfam PF13041 PPR_2 Repeat 264 310 1.9e-63 211.1 PPR repeat family
XP_057768375.1 Pfam PF01535 PPR Repeat 265 294 2.3e-40 134.7 PPR repeat
XP_057768375.1 Pfam PF13041 PPR_2 Repeat 300 348 1.9e-63 211.1 PPR repeat family
XP_057768375.1 Pfam PF01535 PPR Repeat 304 333 2.3e-40 134.7 PPR repeat
XP_057768375.1 Pfam PF23276 TPR_24 Repeat 305 398 9.6e-20 71.6 Pentatricopeptide repeat-containing protein
XP_057768375.1 Pfam PF13812 PPR_3 Repeat 324 384 4.8e-29 100.9 Pentatricopeptide repeat domain
XP_057768375.1 Pfam PF12854 PPR_1 Repeat 332 363 2.7e-48 162.1 PPR repeat
XP_057768375.1 Pfam PF13041 PPR_2 Repeat 335 384 1.9e-63 211.1 PPR repeat family
XP_057768375.1 Pfam PF01535 PPR Repeat 339 364 2.3e-40 134.7 PPR repeat
XP_057768375.1 Pfam PF13812 PPR_3 Repeat 360 417 4.8e-29 100.9 Pentatricopeptide repeat domain
XP_057768375.1 Pfam PF12854 PPR_1 Repeat 369 398 2.7e-48 162.1 PPR repeat
XP_057768375.1 Pfam PF13041 PPR_2 Repeat 370 417 1.9e-63 211.1 PPR repeat family
XP_057768375.1 Pfam PF01535 PPR Repeat 373 403 2.3e-40 134.7 PPR repeat
XP_057768375.1 Pfam PF12854 PPR_1 Repeat 402 434 2.7e-48 162.1 PPR repeat
XP_057768375.1 Pfam PF13041 PPR_2 Repeat 405 452 1.9e-63 211.1 PPR repeat family
XP_057768375.1 Pfam PF01535 PPR Repeat 409 438 2.3e-40 134.7 PPR repeat
XP_057768375.1 Pfam PF01535 PPR Repeat 444 472 2.3e-40 134.7 PPR repeat
XP_057768376.1 Pfam PF13041 PPR_2 Repeat 194 241 1.9e-63 211.1 PPR repeat family
XP_057768376.1 Pfam PF01535 PPR Repeat 198 223 2.3e-40 134.7 PPR repeat
XP_057768376.1 Pfam PF13812 PPR_3 Repeat 222 274 4.8e-29 100.9 Pentatricopeptide repeat domain
XP_057768376.1 Pfam PF01535 PPR Repeat 231 259 2.3e-40 134.7 PPR repeat
XP_057768376.1 Pfam PF13812 PPR_3 Repeat 251 314 4.8e-29 100.9 Pentatricopeptide repeat domain
XP_057768376.1 Pfam PF12854 PPR_1 Repeat 258 291 2.7e-48 162.1 PPR repeat
XP_057768376.1 Pfam PF13041 PPR_2 Repeat 264 310 1.9e-63 211.1 PPR repeat family
XP_057768376.1 Pfam PF01535 PPR Repeat 265 294 2.3e-40 134.7 PPR repeat
XP_057768376.1 Pfam PF13041 PPR_2 Repeat 300 348 1.9e-63 211.1 PPR repeat family
XP_057768376.1 Pfam PF01535 PPR Repeat 304 333 2.3e-40 134.7 PPR repeat
XP_057768376.1 Pfam PF23276 TPR_24 Repeat 305 398 9.6e-20 71.6 Pentatricopeptide repeat-containing protein
XP_057768376.1 Pfam PF13812 PPR_3 Repeat 324 384 4.8e-29 100.9 Pentatricopeptide repeat domain
XP_057768376.1 Pfam PF12854 PPR_1 Repeat 332 363 2.7e-48 162.1 PPR repeat
XP_057768376.1 Pfam PF13041 PPR_2 Repeat 335 384 1.9e-63 211.1 PPR repeat family
XP_057768376.1 Pfam PF01535 PPR Repeat 339 364 2.3e-40 134.7 PPR repeat
XP_057768376.1 Pfam PF13812 PPR_3 Repeat 360 417 4.8e-29 100.9 Pentatricopeptide repeat domain
XP_057768376.1 Pfam PF12854 PPR_1 Repeat 369 398 2.7e-48 162.1 PPR repeat
XP_057768376.1 Pfam PF13041 PPR_2 Repeat 370 417 1.9e-63 211.1 PPR repeat family
XP_057768376.1 Pfam PF01535 PPR Repeat 373 403 2.3e-40 134.7 PPR repeat
XP_057768376.1 Pfam PF12854 PPR_1 Repeat 402 434 2.7e-48 162.1 PPR repeat
XP_057768376.1 Pfam PF13041 PPR_2 Repeat 405 452 1.9e-63 211.1 PPR repeat family
XP_057768376.1 Pfam PF01535 PPR Repeat 409 438 2.3e-40 134.7 PPR repeat
XP_057768376.1 Pfam PF01535 PPR Repeat 444 472 2.3e-40 134.7 PPR repeat
XP_057768377.1 Pfam PF13041 PPR_2 Repeat 233 280 5.4e-63 209.6 PPR repeat family
XP_057768377.1 Pfam PF01535 PPR Repeat 237 262 4.4e-40 133.9 PPR repeat
XP_057768377.1 Pfam PF01535 PPR Repeat 270 298 4.4e-40 133.9 PPR repeat
XP_057768377.1 Pfam PF13812 PPR_3 Repeat 290 353 9.5e-29 100.0 Pentatricopeptide repeat domain
XP_057768377.1 Pfam PF12854 PPR_1 Repeat 297 330 5.1e-48 161.2 PPR repeat
XP_057768377.1 Pfam PF13041 PPR_2 Repeat 303 351 5.4e-63 209.6 PPR repeat family
XP_057768377.1 Pfam PF01535 PPR Repeat 304 333 4.4e-40 133.9 PPR repeat
XP_057768377.1 Pfam PF13041 PPR_2 Repeat 339 387 5.4e-63 209.6 PPR repeat family
XP_057768377.1 Pfam PF01535 PPR Repeat 343 372 4.4e-40 133.9 PPR repeat
XP_057768377.1 Pfam PF23276 TPR_24 Repeat 344 437 1.5e-19 70.9 Pentatricopeptide repeat-containing protein
XP_057768377.1 Pfam PF13812 PPR_3 Repeat 363 423 9.5e-29 100.0 Pentatricopeptide repeat domain
XP_057768377.1 Pfam PF12854 PPR_1 Repeat 371 402 5.1e-48 161.2 PPR repeat
XP_057768377.1 Pfam PF13041 PPR_2 Repeat 374 423 5.4e-63 209.6 PPR repeat family
XP_057768377.1 Pfam PF01535 PPR Repeat 378 403 4.4e-40 133.9 PPR repeat
XP_057768377.1 Pfam PF13812 PPR_3 Repeat 399 456 9.5e-29 100.0 Pentatricopeptide repeat domain
XP_057768377.1 Pfam PF12854 PPR_1 Repeat 408 437 5.1e-48 161.2 PPR repeat
XP_057768377.1 Pfam PF13041 PPR_2 Repeat 409 456 5.4e-63 209.6 PPR repeat family
XP_057768377.1 Pfam PF01535 PPR Repeat 412 442 4.4e-40 133.9 PPR repeat
XP_057768377.1 Pfam PF12854 PPR_1 Repeat 441 473 5.1e-48 161.2 PPR repeat
XP_057768377.1 Pfam PF13041 PPR_2 Repeat 444 491 5.4e-63 209.6 PPR repeat family
XP_057768377.1 Pfam PF01535 PPR Repeat 448 477 4.4e-40 133.9 PPR repeat
XP_057768377.1 Pfam PF01535 PPR Repeat 483 511 4.4e-40 133.9 PPR repeat
XP_057768378.1 Pfam PF13041 PPR_2 Repeat 233 280 5.4e-63 209.6 PPR repeat family
XP_057768378.1 Pfam PF01535 PPR Repeat 237 262 4.4e-40 133.9 PPR repeat
XP_057768378.1 Pfam PF01535 PPR Repeat 270 298 4.4e-40 133.9 PPR repeat
XP_057768378.1 Pfam PF13812 PPR_3 Repeat 290 353 9.5e-29 100.0 Pentatricopeptide repeat domain
XP_057768378.1 Pfam PF12854 PPR_1 Repeat 297 330 5.1e-48 161.2 PPR repeat
XP_057768378.1 Pfam PF13041 PPR_2 Repeat 303 351 5.4e-63 209.6 PPR repeat family
XP_057768378.1 Pfam PF01535 PPR Repeat 304 333 4.4e-40 133.9 PPR repeat
XP_057768378.1 Pfam PF13041 PPR_2 Repeat 339 387 5.4e-63 209.6 PPR repeat family
XP_057768378.1 Pfam PF01535 PPR Repeat 343 372 4.4e-40 133.9 PPR repeat
XP_057768378.1 Pfam PF23276 TPR_24 Repeat 344 437 1.5e-19 70.9 Pentatricopeptide repeat-containing protein
XP_057768378.1 Pfam PF13812 PPR_3 Repeat 363 423 9.5e-29 100.0 Pentatricopeptide repeat domain
XP_057768378.1 Pfam PF12854 PPR_1 Repeat 371 402 5.1e-48 161.2 PPR repeat
XP_057768378.1 Pfam PF13041 PPR_2 Repeat 374 423 5.4e-63 209.6 PPR repeat family
XP_057768378.1 Pfam PF01535 PPR Repeat 378 403 4.4e-40 133.9 PPR repeat
XP_057768378.1 Pfam PF13812 PPR_3 Repeat 399 456 9.5e-29 100.0 Pentatricopeptide repeat domain
XP_057768378.1 Pfam PF12854 PPR_1 Repeat 408 437 5.1e-48 161.2 PPR repeat
XP_057768378.1 Pfam PF13041 PPR_2 Repeat 409 456 5.4e-63 209.6 PPR repeat family
XP_057768378.1 Pfam PF01535 PPR Repeat 412 442 4.4e-40 133.9 PPR repeat
XP_057768378.1 Pfam PF12854 PPR_1 Repeat 441 473 5.1e-48 161.2 PPR repeat
XP_057768378.1 Pfam PF13041 PPR_2 Repeat 444 491 5.4e-63 209.6 PPR repeat family
XP_057768378.1 Pfam PF01535 PPR Repeat 448 477 4.4e-40 133.9 PPR repeat
XP_057768378.1 Pfam PF01535 PPR Repeat 483 511 4.4e-40 133.9 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA
XM_057912395.1
TCAAAACTTTAATGTACCCTTAATTTACATAATATAAAATTTCAAAAAATTATCAATATAAGTTAAGAAGAACCTGATGACAACATAGTTATTTTCTCATTTAATTATTTTTGAAGAAAAGGCTTTTCTTTTTTATCCTGTTGTGATATAGTACTACTATAGTAATCTGTGCATAGATTGTTGGCTGTCTCTGTTAATATAGTTTGTATTAGAATTTATAACAAAGCACCTTAGTTGTTGCTATTATTAAATAACATTAA...
XM_057912393.1
AGTTATTTTCTCATTTAATTATTTTTGAAGAAAAGGCTTTTCTTTTTTATCCTGTTGTGATATAGTACTACTATAGTAATCTGTGCATAGATTGTTGGCTGTCTCTGTTAATATAGTTTGTATTAGAATTTATAACAAAGCACCTTAGTTGTTGCTATTATTAAATAACATTAAAATTCAATTCCTTCCTCAAAAAGAAAAGAACAAATATATTTCATATTCATAGAGTTTCAAGTTACTGTTCGCGCGAATTTTCTCCA...

CDS

4 records

下载 CDS FASTA
LOC130988519
ATGTCACGGCGGCTTTCACTCGTATACAGAACTCACAGATTATTGAGAAGTGCATATTCGCCATCATTCACTAATCATGTTGCAGCAGCGCCTTATCCAGTTGCTTTTAGTTGGTATAAAATGCAGGCCTACCCCTCTTTCTTATCGAGCAGAAATATTCTCATCAGCCCGCATTTTTCATGGCATGAAATTGTGACTGGATATTCACTTACGTTTAGGCCCTATTGCAGTTTAGAGGAATTTGATTTGGCCAAGCCATC...
LOC130988519
ATGTCACGGCGGCTTTCACTCGTATACAGAACTCACAGATTATTGAGAAGTGCATATTCGCCATCATTCACTAATCATGTTGCAGCAGCGCCTTATCCAGTTGCTTTTAGTTGGTATAAAATGCAGGCCTACCCCTCTTTCTTATCGAGCAGAAATATTCTCATCAGCCCGCATTTTTCATGGCATGAAATTGTGACTGGATATTCACTTACGTTTAGGCCCTATTGCAGTTTAGAGGAATTTGATTTGGCCAAGCCATC...

Protein

4 records

下载 Protein FASTA
XP_057768375.1
MSRRLSLVYRTHRLLRSAYSPSFTNHVAAAPYPVAFSCLEEFDLAKPSSTDGTDHADEVYKTVLDCARPEYKMEAALDELGIELTTPLVVEVLHRLRFEEKLAFRFFNWAGHQEHYSHEPESYNRMIEILSSTKYKVKQFRIICDLLDYMKRSDKSSVPIDVLLSILRRYTEKHLTHLQKFAKKKKIRVKTQPEINAFNLLLDAMCKCALVEDAEAMYQRVRSKVMPNADTYNILFFGWCRVRNPTRAMGVLENMISMGH...
XP_057768376.1
MSRRLSLVYRTHRLLRSAYSPSFTNHVAAAPYPVAFSCLEEFDLAKPSSTDGTDHADEVYKTVLDCARPEYKMEAALDELGIELTTPLVVEVLHRLRFEEKLAFRFFNWAGHQEHYSHEPESYNRMIEILSSTKYKVKQFRIICDLLDYMKRSDKSSVPIDVLLSILRRYTEKHLTHLQKFAKKKKIRVKTQPEINAFNLLLDAMCKCALVEDAEAMYQRVRSKVMPNADTYNILFFGWCRVRNPTRAMGVLENMISMGH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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