当前解析结果
SmilChr06G001002| 统一新 Gene ID | SmilChr06G001002 |
|---|---|
| 名称 | SmilChr06G001002 |
| 描述 | leucine-rich repeat extensin-like protein 4 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 9915433 - 9917252 / + |
| NCBI Gene ID | LOC130988537 |
|---|---|
| GeneID | 130988537 |
| locus_tag | - |
| NCBI Name | LOC130988537 |
| 原始查询 | LOC130988537 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | leucine-rich repeat extensin-like protein 4 |
| 产物 | leucine-rich repeat extensin-like protein 4 |
| Arabidopsis | AT4G29240 (AT4G29240)Leucine-rich repeat (LRR) family protein [Source:NCBI gene (formerly Entrezgene);Acc:829045] identity=62.9; qcov=0.854; evalue=2.57e-155; confidence=high |
| Rice | Os05g0188700- identity=58.3; qcov=0.884; evalue=5.23e-131; confidence=high |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00560 (LRR_1); PF08263 (LRRNT_2); PF13855 (LRR_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130988537 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057768402.1 |
| 2 | Cell wall | 细胞壁 | 0.40000 | XP_057768402.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057768402.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057768402.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057768402.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:9915856 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B100 |
Chr6:9915893 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B100,B97,D4 |
Chr6:9915973 |
A |
ACG |
2bp_insertion | frameshift_variant | 1 | B10 |
Chr6:9915973 |
A |
ACG |
2bp_insertion | CDS_variant | 1 | B10 |
Chr6:9915986 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr6:9916058 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr6:9916078 |
CCG |
C |
2bp_deletion | frameshift_variant | 1 | C33 |
Chr6:9916078 |
CCG |
C |
2bp_deletion | CDS_variant | 1 | C33 |
Chr6:9916081 |
ATT |
A |
2bp_deletion | frameshift_variant | 1 | C33 |
Chr6:9916081 |
ATT |
A |
2bp_deletion | CDS_variant | 1 | C33 |
Chr6:9916085 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C41 |
Chr6:9916152 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | C41 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057768402.1PF08263
LRRNT_2 64-98 aa
PF00560
LRR_1 136-157 aa
PF13855
LRR_8 136-193 aa
PF00560
LRR_1 159-176 aa
PF00560
LRR_1 184-202 aa
PF00560
LRR_1 277-298 aa
PF00560
LRR_1 300-322 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057768402.1 |
Pfam | PF08263 |
LRRNT_2 | Family | 64 | 98 | 1.4e-07 | 32.4 | Leucine rich repeat N-terminal domain |
XP_057768402.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 136 | 157 | 8.6e-20 | 67.3 | Leucine Rich Repeat |
XP_057768402.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 136 | 193 | 9.5e-19 | 67.6 | Leucine rich repeat |
XP_057768402.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 159 | 176 | 8.6e-20 | 67.3 | Leucine Rich Repeat |
XP_057768402.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 184 | 202 | 8.6e-20 | 67.3 | Leucine Rich Repeat |
XP_057768402.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 277 | 298 | 8.6e-20 | 67.3 | Leucine Rich Repeat |
XP_057768402.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 300 | 322 | 8.6e-20 | 67.3 | Leucine Rich Repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。