当前解析结果
SmilChr06G001009| 统一新 Gene ID | SmilChr06G001009 |
|---|---|
| 名称 | SmilChr06G001009 |
| 描述 | glucan endo-1,3-beta-glucosidase 13-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 9980226 - 9984559 / - |
| NCBI Gene ID | LOC130988544 |
|---|---|
| GeneID | 130988544 |
| locus_tag | - |
| NCBI Name | LOC130988544 |
| 原始查询 | LOC130988544 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | glucan endo-1,3-beta-glucosidase 13-like |
| 产物 | glucan endo-1%2C3-beta-glucosidase 13-like |
| Arabidopsis | AT5G56590 (AT5G56590)O-Glycosyl hydrolases family 17 protein [Source:NCBI gene (formerly Entrezgene);Acc:835760] identity=68.7; qcov=0.998; evalue=0; confidence=high |
| Rice | Os01g0739700- identity=74.4; qcov=0.953; evalue=0; confidence=high |
| GO | GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds); GO:0005886 (plasma membrane); GO:0005975 (carbohydrate metabolic process) |
| KEGG | - |
| Pfam | PF00332 (Glyco_hydro_17); PF07983 (X8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130988544 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057768409.1 |
| 2 | Cell wall | 细胞壁 | 0.60000 | XP_057768409.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057768409.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057768409.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057768409.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:9980581 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B16 |
Chr6:9980582 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B52,D11 |
Chr6:9981143 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A18,B115,B134,B71,C47 |
Chr6:9981287 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B52,D11 |
Chr6:9981457 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C38 |
Chr6:9981462 |
G |
GA |
1bp_insertion | frameshift_variant | 2 | B15,B42 |
Chr6:9981462 |
G |
GA |
1bp_insertion | CDS_variant | 2 | B15,B42 |
Chr6:9981581 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C27,C82 |
Chr6:9981612 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C72 |
Chr6:9981829 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A14 |
Chr6:9981830 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B74 |
Chr6:9981846 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B16,D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057768409.1PF00332
Glyco_hydro_17 24-342 aa
PF07983
X8 364-435 aa
XP_057768410.1PF00332
Glyco_hydro_17 2-269 aa
PF07983
X8 291-362 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057768409.1 |
Pfam | PF00332 |
Glyco_hydro_17 | Domain | 24 | 342 | 1.6e-95 | 321.0 | Glycosyl hydrolases family 17 |
XP_057768409.1 |
Pfam | PF07983 |
X8 | Domain | 364 | 435 | 6e-21 | 75.6 | X8 domain |
XP_057768410.1 |
Pfam | PF00332 |
Glyco_hydro_17 | Domain | 2 | 269 | 1.2e-77 | 262.3 | Glycosyl hydrolases family 17 |
XP_057768410.1 |
Pfam | PF07983 |
X8 | Domain | 291 | 362 | 4.6e-21 | 76.0 | X8 domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。