Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G001023`

染色体: Chr06 坐标: 10135857-10137909 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G001023`
名称	SmilChr06G001023
描述	uncharacterized SmilChr06G001023
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	10135857 - 10137909 / `+`

ID 对照

NCBI Gene ID	`LOC130988556`
GeneID	`130988556`
locus_tag	`-`
NCBI Name	`LOC130988556`
原始查询	`LOC130988556`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	tRNA/rRNA methyltransferase (SpoU) family protein [Source:NCBI gene (formerly Entrezgene);Acc:816506]; symbol=AT2G19870; hit=AT2G19870; species=arabidopsis; confidence=high
产物	tRNA/rRNA methyltransferase (SpoU) family protein [Source:NCBI gene (formerly Entrezgene);Acc:816506]; symbol=AT2G19870; hit=AT2G19870; species=arabidopsis; confidence=high
Arabidopsis	`AT2G19870` (AT2G19870) tRNA/rRNA methyltransferase (SpoU) family protein [Source:NCBI gene (formerly Entrezgene);Acc:816506] identity=61.4; qcov=0.805; evalue=6.58e-165; confidence=high
Rice	`Os01g0742000` - identity=75.3; qcov=0.295; evalue=1.78e-65; confidence=weak
GO	GO:0003723 (RNA binding); GO:0008173 (RNA methyltransferase activity); GO:0009507 (chloroplast); GO:0031167 (rRNA methylation)
KEGG	-
Pfam	PF00588 (SpoU_methylase); PF08032 (SpoU_sub_bind)
InterPro	-
eggNOG	-
NR	GeneID:130988556

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057768422.1`
2	Chloroplast stroma	叶绿体基质	0.80000	`XP_057768422.1`
3	Nucleus	细胞核	0.00000	`XP_057768422.1`
4	Chromosome	染色体	0.00000	`XP_057768422.1`
5	Centromere	着丝粒	0.00000	`XP_057768422.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:10136208`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B10,C27,C82
`Chr6:10136242`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A15,B9,C38
`Chr6:10136265`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B10,C27
`Chr6:10136368`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C64,C66
`Chr6:10136666`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C38
`Chr6:10137135`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C30,C86
`Chr6:10137234`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B81
`Chr6:10137684`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B100,C29

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057768422.1

508 aa

254

508

SpoU_sub_bind

SpoU_methylase

PF08032 SpoU_sub_bind 226-310 aa PF00588 SpoU_methylase 328-455 aa

XP_057768423.1

508 aa

254

508

SpoU_sub_bind

SpoU_methylase

PF08032 SpoU_sub_bind 226-310 aa PF00588 SpoU_methylase 328-455 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057768422.1`	Pfam	`PF08032`	SpoU_sub_bind	Domain	226	310	2.3e-10	41.4	RNA 2'-O ribose methyltransferase substrate binding
`XP_057768422.1`	Pfam	`PF00588`	SpoU_methylase	Family	328	455	4.7e-28	98.8	SpoU rRNA Methylase family
`XP_057768423.1`	Pfam	`PF08032`	SpoU_sub_bind	Domain	226	310	2.3e-10	41.4	RNA 2'-O ribose methyltransferase substrate binding
`XP_057768423.1`	Pfam	`PF00588`	SpoU_methylase	Family	328	455	4.7e-28	98.8	SpoU rRNA Methylase family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057912439.1
AAATCATATTGGAAAGTGGAAACCTAGTTTCCAACCATGAAGGCACAAACGACGCCGTTTACTTGTTTCTTGCAGTTTCCCCATTCCTTTAGGCCGAGCAGGCTCTCAAAACAAGGATAAACCCTTCCATCATGGCCATGGCCGTCAAAATTCTAATTTAAGAATCGATTTTTAAGTTGACGATTTCAGCAACAATCATATCAGAGAACTCATCTTTATCATTATTTAAATTTCCAGTAAACATGACCAAGCCTGCAGCA...

XM_057912440.1
AAATCATATTGGAAAGTGGAAACCTAGTTTCCAACCATGAAGGCACAAACGACGCCGTTTACTTGTTTCTTGCAGTTTCCCCATTCCTTTAGGCCGAGCAGGCTCTCAAAACAAGGATAAACCCTTCCATCATGGCCATGGCCGTCAAAATTCTAATTTAAGTAAACATGACCAAGCCTGCAGCATTACCTTTAGCATTTAGGATTTCTTCGAGTCCCACAAAGTTCCTTTGTCACTTTAACGCTCCAAAGCCCGTCTCC...

CDS

2 records

下载 CDS FASTA

LOC130988556
ATGACCAAGCCTGCAGCATTACCTTTAGCATTTAGGATTTCTTCGAGTCCCACAAAGTTCCTTTGTCACTTTAACGCTCCAAAGCCCGTCTCCATTGTTGTTGGCTGCCATCTAATTCTTGGGTCGAATAAAAGAAGAGCTCTCGACCAATTTCTATCTGTCGGACCCAGAAATTGTATGACAAATCATTTTCTGAACTGTTCGCTATTGGGAGGGAGGAGTTTTTCGAGTTCGAGTTTAAACAATGCGGCTGAAACAAG...

Protein

2 records

下载 Protein FASTA

XP_057768422.1
MTKPAALPLAFRISSSPTKFLCHFNAPKPVSIVVGCHLILGSNKRRALDQFLSVGPRNCMTNHFLNCSLLGGRSFSSSSLNNAAETSEKPLPWLAASVEGGERRKGVKNWASKGVKSSWEESAEKFLKGGVSTVENDEMPKLESTRNGFRNRSSNYVEREEDEGEDEVENDSRWYNIRKRYDNYVEGRPAPERPEVRRWSKQESWGRKTWKEAKESTVPRIVGEGVYGVGPVLAALSAGRREFYALYVQEGLDLSSNNRK...

XP_057768423.1
MTKPAALPLAFRISSSPTKFLCHFNAPKPVSIVVGCHLILGSNKRRALDQFLSVGPRNCMTNHFLNCSLLGGRSFSSSSLNNAAETSEKPLPWLAASVEGGERRKGVKNWASKGVKSSWEESAEKFLKGGVSTVENDEMPKLESTRNGFRNRSSNYVEREEDEGEDEVENDSRWYNIRKRYDNYVEGRPAPERPEVRRWSKQESWGRKTWKEAKESTVPRIVGEGVYGVGPVLAALSAGRREFYALYVQEGLDLSSNNRK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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