Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G002962`

染色体: Chr01 坐标: 48514321-48519626 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G002962`
名称	SmilChr01G002962
描述	methyl-CpG-binding domain-containing protein 2-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	48514321 - 48519626 / `-`

ID 对照

NCBI Gene ID	`LOC130988559`
GeneID	`130988559`
locus_tag	`-`
NCBI Name	`LOC130988559`
原始查询	`LOC130988559`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	methyl-CpG-binding domain-containing protein 2-like
产物	methyl-CpG-binding domain-containing protein 2-like
Arabidopsis	`AT5G35330` (MBD02) methyl-CPG-binding domain protein 02 [Source:NCBI gene (formerly Entrezgene);Acc:833487] identity=50.4; qcov=0.726; evalue=1.42e-83; confidence=high
Rice	`Os09g0494300` - identity=54; qcov=0.597; evalue=7.83e-82; confidence=medium
GO	GO:0003677 (DNA binding); GO:0008270 (zinc ion binding)
KEGG	-
Pfam	PF01429 (MBD); PF07496 (zf-CW)
InterPro	-
eggNOG	-
NR	GeneID:130988559

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057768430.1`
2	Nucleoplasm	核质	0.60000	`XP_057768454.1`
3	Chromosome	染色体	0.00000	`XP_057768430.1`
4	Centromere	着丝粒	0.00000	`XP_057768430.1`
5	Chromatin	染色质	0.00000	`XP_057768430.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:48514584`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B138,D11
`Chr1:48514640`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B66
`Chr1:48516733`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C31
`Chr1:48516739`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B18,C18,C2,C21,D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057768430.1

376 aa

188

376

zf-CW

MBD

PF07496 zf-CW 134-183 aa PF01429 MBD 203-262 aa

XP_057768434.1

376 aa

188

376

zf-CW

MBD

PF07496 zf-CW 134-183 aa PF01429 MBD 203-262 aa

XP_057768440.1

376 aa

188

376

zf-CW

MBD

PF07496 zf-CW 134-183 aa PF01429 MBD 203-262 aa

XP_057768447.1

376 aa

188

376

zf-CW

MBD

PF07496 zf-CW 134-183 aa PF01429 MBD 203-262 aa

XP_057768454.1

372 aa

186

372

zf-CW

MBD

PF07496 zf-CW 134-183 aa PF01429 MBD 203-258 aa

XP_057768460.1

372 aa

186

372

zf-CW

MBD

PF07496 zf-CW 134-183 aa PF01429 MBD 203-258 aa

XP_057768465.1

372 aa

186

372

zf-CW

MBD

PF07496 zf-CW 134-183 aa PF01429 MBD 203-258 aa

XP_057768473.1

372 aa

186

372

zf-CW

MBD

PF07496 zf-CW 134-183 aa PF01429 MBD 203-258 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057768430.1`	Pfam	`PF07496`	zf-CW	Domain	134	183	2.3e-11	44.2	CW-type Zinc Finger
`XP_057768430.1`	Pfam	`PF01429`	MBD	Domain	203	262	3.5e-13	49.7	Methyl-CpG binding domain
`XP_057768434.1`	Pfam	`PF07496`	zf-CW	Domain	134	183	2.3e-11	44.2	CW-type Zinc Finger
`XP_057768434.1`	Pfam	`PF01429`	MBD	Domain	203	262	3.5e-13	49.7	Methyl-CpG binding domain
`XP_057768440.1`	Pfam	`PF07496`	zf-CW	Domain	134	183	2.3e-11	44.2	CW-type Zinc Finger
`XP_057768440.1`	Pfam	`PF01429`	MBD	Domain	203	262	3.5e-13	49.7	Methyl-CpG binding domain
`XP_057768447.1`	Pfam	`PF07496`	zf-CW	Domain	134	183	2.3e-11	44.2	CW-type Zinc Finger
`XP_057768447.1`	Pfam	`PF01429`	MBD	Domain	203	262	3.5e-13	49.7	Methyl-CpG binding domain
`XP_057768454.1`	Pfam	`PF07496`	zf-CW	Domain	134	183	2.2e-11	44.3	CW-type Zinc Finger
`XP_057768454.1`	Pfam	`PF01429`	MBD	Domain	203	258	1.5e-10	41.2	Methyl-CpG binding domain
`XP_057768460.1`	Pfam	`PF07496`	zf-CW	Domain	134	183	2.2e-11	44.3	CW-type Zinc Finger
`XP_057768460.1`	Pfam	`PF01429`	MBD	Domain	203	258	1.5e-10	41.2	Methyl-CpG binding domain
`XP_057768465.1`	Pfam	`PF07496`	zf-CW	Domain	134	183	2.2e-11	44.3	CW-type Zinc Finger
`XP_057768465.1`	Pfam	`PF01429`	MBD	Domain	203	258	1.5e-10	41.2	Methyl-CpG binding domain
`XP_057768473.1`	Pfam	`PF07496`	zf-CW	Domain	134	183	2.2e-11	44.3	CW-type Zinc Finger
`XP_057768473.1`	Pfam	`PF01429`	MBD	Domain	203	258	1.5e-10	41.2	Methyl-CpG binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

8 records

下载 cDNA FASTA

XM_057912464.1
AGGATGGCACCACAAATTAGTAGATGTGGTCCATTTGTTTAAAAATGATTATATCACTAATCATCGATTTTACACAAATCCTCTAAGCAACTAGTACAGTAGTTAGCAAAATGACGCAACAATTGACCTCAAAATTCCTCACCAAATTTTATTGTTTATTTCTAAATTTTATTTTTTACTTTCCCAACAATTTTATCTATTTATTTACATCTTCTATCTCAATCAAATAAAACGTAAAAAATGTGATTTAAAGAAAAGTA...

XM_057912447.1
ACTAGTACAGTAGTTAGCAAAATGACGCAACAATTGACCTCAAAATTCCTCACCAAATTTTATTGTTTATTTCTAAATTTTATTTTTTACTTTCCCAACAATTTTATCTATTTATTTACATCTTCTATCTCAATCAAATAAAACGTAAAAAATGTGATTTAAAGAAAAGTAGAAATTAGTTCCCAAAATCATAATATTAGCATCCGTGTAGGAATTTGTTGTGTCTTCTTCTCTTCAACATGGAGTATTTGGTTTGTCTC...

CDS

8 records

下载 CDS FASTA

LOC130988559
ATGGAGGCAACTCTGCAACCAGAGTCTTTGAAACTTACCATCAAATTGAAAAGAGACACAAATGTCAGTGATACTTCAACTCCAGCCGATCACCTGAATAACACTGAAGGAGAACACAATGCATCAGATAGTTCTGATCCGCCAGGGACCCTGAATACATTTTGTGAGGACCAAGTGGACTTTAGTTCTGCACAAGTGGGAGAAAATCATGCCACTGTAAATGAAGGAAATCAAACTTCTGAAAGTTCTCAATATCAAAT...

Protein

8 records

下载 Protein FASTA

XP_057768430.1
MEATLQPESLKLTIKLKRDTNVSDTSTPADHLNNTEGEHNASDSSDPPGTLNTFCEDQVDFSSAQVGENHATVNEGNQTSESSQYQMVLYDPAVNDAGNNEKSLDPGNCMPPIRRPHPFADRTPRVLPSVGAFTVQCANCFKWRLIPTKEKYEEIREHIIAQPFFCETAREWHPDISCDDPPDITQDGDRLWAIDKPNIAQPPPGWQRLLRIRGEGGTRFADVYYVAPSGKRLRSVLDIQRYLDKHPEYMSEGVSLSRFS...

XP_057768434.1
MEATLQPESLKLTIKLKRDTNVSDTSTPADHLNNTEGEHNASDSSDPPGTLNTFCEDQVDFSSAQVGENHATVNEGNQTSESSQYQMVLYDPAVNDAGNNEKSLDPGNCMPPIRRPHPFADRTPRVLPSVGAFTVQCANCFKWRLIPTKEKYEEIREHIIAQPFFCETAREWHPDISCDDPPDITQDGDRLWAIDKPNIAQPPPGWQRLLRIRGEGGTRFADVYYVAPSGKRLRSVLDIQRYLDKHPEYMSEGVSLSRFS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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