Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G001079`

染色体: Chr06 坐标: 10749036-10753217 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G001079`
名称	SmilChr06G001079
描述	CDPK-related protein kinase-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	10749036 - 10753217 / `+`

ID 对照

NCBI Gene ID	`LOC130988600`
GeneID	`130988600`
locus_tag	`-`
NCBI Name	`LOC130988600`
原始查询	`LOC130988600`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	CDPK-related protein kinase-like
产物	CDPK-related protein kinase-like
Arabidopsis	`AT3G50530` (CRK) CDPK-related kinase [Source:NCBI gene (formerly Entrezgene);Acc:824217] identity=76.9; qcov=1.02; evalue=0; confidence=high
Rice	`Os03g0366200` (OsCRK1) - identity=73.2; qcov=0.899; evalue=0; confidence=high
GO	GO:0004683 (calcium/calmodulin-dependent protein kinase activity); GO:0005509 (calcium ion binding); GO:0005516 (calmodulin binding); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0009931 (calcium-dependent protein serine/threonine kinase activity); GO:0018105 (peptidyl-serine phosphorylation); GO:0035556 (intracellular signal transduction); GO:0046777 (protein autophosphorylation)
KEGG	smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage)); smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage))
Pfam	PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr)
InterPro	-
eggNOG	-
NR	GeneID:130988600

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057768466.1`
2	Cytosol	细胞质基质	0.40000	`XP_057768466.1`
3	Cytoplasm	细胞质	0.20000	`XP_057768466.1`
4	Nucleus	细胞核	0.00000	`XP_057768466.1`
5	Chromosome	染色体	0.00000	`XP_057768466.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:10749608`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr6:10749699`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B103,B63,B83,C21,C63
`Chr6:10750259`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B113
`Chr6:10750995`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C9
`Chr6:10751205`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B128,C19,C9,D10,D3
`Chr6:10751353`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C6
`Chr6:10752228`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A15,B9,C22,C38,C85
`Chr6:10752231`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C87
`Chr6:10752260`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B24,C8
`Chr6:10752282`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A15,B9,C22,C38,C85
`Chr6:10752431`	`A`	`AT`	1bp_insertion	frameshift_variant	1	B125
`Chr6:10752431`	`A`	`AT`	1bp_insertion	CDS_variant	1	B125

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057768466.1

603 aa

302

603

Pkinase

PK_Tyr_Ser-Thr

PF00069 Pkinase 149-411 aa PF07714 PK_Tyr_Ser-Thr 151-404 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057768466.1`	Pfam	`PF00069`	Pkinase	Domain	149	411	5e-73	246.5	Protein kinase domain
`XP_057768466.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	151	404	3.2e-35	122.4	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057912483.1
CGAAAATCGAATTCCTTTTTTCAAATTTTGAGTTTTAATTTTTCCTTTTAATTCCAAAGCACCCATCGTCGTTTACTTTTTATCACCTTCTCCGCAGATCCCTCTCTCTCACTTCCTTCTCTCACTTTCTTCTTTCGCAGAGATTCAAAGCTGAAATCCCTTTATAAAAATGTGTTCAAATCTTTGAAATTAGTGAGTTTCTCGTGCTTCCTTTTTTGTATTGAAGCAAGGTTTTGAGCTGCTGCGGAGCAATAAAAGAG...

CDS

1 records

下载 CDS FASTA

LOC130988600
ATGGGAGTTTGCACTTCTAAACCTAAACCATCTCAAGAGCTCAATTGCCATTCATCAGATGAAATCAGCGGTAATTATGCTTCGGGGCAGAATAACGAAGAGCAGCCAGTTCCAGGCGAGAATGCGAGGAGTTCTGGAAACTTCGAGAAGAAAGCTGAAGCAGGAAAAAAGTCTCCGTTCTTCCCCTTCTACAGCCCGAGTCCAGCTCATTACCTGTTCTCCAAGAAGTCGCCGGCGAGATCTCCGGCGCCCGGTAGCGG...

Protein

1 records

下载 Protein FASTA

XP_057768466.1
MGVCTSKPKPSQELNCHSSDEISGNYASGQNNEEQPVPGENARSSGNFEKKAEAGKKSPFFPFYSPSPAHYLFSKKSPARSPAPGSGTPRRFFKRPFPPPSPAKHIKAVLARRHGSVKPNEAAIPEGKEVEGAGLDKSFGFSKNFYSKYEVGEEVGRGHFGYTCKAKFKKGELKGQEVAVKVIPKAKMTTAIAIEDVRKEVKILRALTGHTNLIQFYDAYEDHDNVYVVMELCEGGELLDKILSRGGKYTEDDAKLVMIQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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