Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G001087`

染色体: Chr06 坐标: 10871154-10875393 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G001087`
名称	SmilChr06G001087
描述	serine/threonine receptor-like kinase NFP
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	10871154 - 10875393 / `+`

ID 对照

NCBI Gene ID	`LOC130988608`
GeneID	`130988608`
locus_tag	`-`
NCBI Name	`LOC130988608`
原始查询	`LOC130988608`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	serine/threonine receptor-like kinase NFP
产物	serine/threonine receptor-like kinase NFP
Arabidopsis	`AT2G33580` (LYK5) Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:817923] identity=30; qcov=1.07; evalue=6.08e-75; confidence=low
Rice	`Os03g0233300` (OsLysM-RLK2) - identity=43.6; qcov=0.959; evalue=1.84e-141; confidence=medium
GO	GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF23446 (LysM1_NFP_LYK); PF23457 (LysM2_NFP); PF23462 (LysM3_NFP); PF23472 (LysM2_CERK1_LYK3_4_5)
InterPro	-
eggNOG	-
NR	GeneID:130988608

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057768478.1`
2	Nucleus	细胞核	0.00000	`XP_057768478.1`
3	Chromosome	染色体	0.00000	`XP_057768478.1`
4	Centromere	着丝粒	0.00000	`XP_057768478.1`
5	Chromatin	染色质	0.00000	`XP_057768478.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:10871768`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B95
`Chr6:10872156`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A4,B130,C65
`Chr6:10872302`	`G`	`A`	EMS_canonical_SNV	stop_gained	3	B67,B68,B69
`Chr6:10872302`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B67,B68,B69
`Chr6:10872350`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B28,C82
`Chr6:10872434`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C61
`Chr6:10872517`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B84
`Chr6:10872712`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A14
`Chr6:10873021`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C61
`Chr6:10873227`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D4
`Chr6:10873286`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B52
`Chr6:10873309`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C65

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057768478.1

612 aa

306

612

LysM1_NFP_LYK

LysM2_NFP

LysM2_CERK1_LYK3_4_5

LysM3_NFP

Pkinase

PK_Tyr_Ser-Thr

PF23446 LysM1_NFP_LYK 45-101 aa PF23457 LysM2_NFP 106-161 aa PF23472 LysM2_CERK1_LYK3_4_5 107-160 aa PF23462 LysM3_NFP 176-222 aa PF00069 Pkinase 356-477 aa PF07714 PK_Tyr_Ser-Thr 357-475 aa

XP_057768479.1

612 aa

306

612

LysM1_NFP_LYK

LysM2_NFP

LysM2_CERK1_LYK3_4_5

LysM3_NFP

Pkinase

PK_Tyr_Ser-Thr

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057768478.1`	Pfam	`PF23446`	LysM1_NFP_LYK	Domain	45	101	5.3e-22	79.2	NFP/LYK LysM1 domain
`XP_057768478.1`	Pfam	`PF23457`	LysM2_NFP	Domain	106	161	4.7e-28	97.7	NFP LysM2 domain
`XP_057768478.1`	Pfam	`PF23472`	LysM2_CERK1_LYK3_4_5	Domain	107	160	1.5e-08	35.2	LYK3/4/5 LysM2 domain
`XP_057768478.1`	Pfam	`PF23462`	LysM3_NFP	Domain	176	222	3.7e-22	79.3	NFP LysM3 domain
`XP_057768478.1`	Pfam	`PF00069`	Pkinase	Domain	356	477	3e-24	86.6	Protein kinase domain
`XP_057768478.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	357	475	6.3e-26	91.9	Protein tyrosine and serine/threonine kinase
`XP_057768479.1`	Pfam	`PF23446`	LysM1_NFP_LYK	Domain	45	101	5.3e-22	79.2	NFP/LYK LysM1 domain
`XP_057768479.1`	Pfam	`PF23457`	LysM2_NFP	Domain	106	161	4.7e-28	97.7	NFP LysM2 domain
`XP_057768479.1`	Pfam	`PF23472`	LysM2_CERK1_LYK3_4_5	Domain	107	160	1.5e-08	35.2	LYK3/4/5 LysM2 domain
`XP_057768479.1`	Pfam	`PF23462`	LysM3_NFP	Domain	176	222	3.7e-22	79.3	NFP LysM3 domain
`XP_057768479.1`	Pfam	`PF00069`	Pkinase	Domain	356	477	3e-24	86.6	Protein kinase domain
`XP_057768479.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	357	475	6.3e-26	91.9	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057912495.1
TGAAATTTAAATAGAAGTTTAATCAGGGGAATCTTTAGTTGTCTTTTGTAATGGATCCCCTGGCAAGAGGACAAAATTGATGGAGACCTATTTTTCCTATATGCTATATAGTTGACATAGTTGTTTGCATCTATGTTTAAAAACAAAAATAATTTCTTGATGCCGACAGCCAAGAGAAATTAATATAAAAAAATAAAGTTGGTGTAGCCATCAACTCCTTTTCTTTAATCTTATAGTTGTTGTCTTGCTTTTGAAATTCA...

XM_057912496.1
TGAAATTTAAATAGAAGTTTAATCAGGGGAATCTTTAGTTGTCTTTTGTAATGGATCCCCTGGCAAGAGGACAAAATTGATGGAGACCTATTTTTCCTATATGCTATATAGTTGACATAGTTGTTTGCATCTATGTTTAAAAACAAAAATAATTTCTTGATGCCGACAGCCAAGAGAAATTAATATAAAAAAATAAAGTTGGTGTAGCCATCAACTCCTTTTCTTTAATCTTATAGTTGTTGTCTTGCTTTTGAAATTCA...

CDS

2 records

下载 CDS FASTA

LOC130988608
ATGACAATCTCCCTATATACAATTTTGATAATCTTTTCACTGTTTCTCATCTTTGTGATTTCCTCTGCTGCTTCTCAGTTTGTCAATAATACTGCCGTTACTGACTTCAGATCATCAGCAGACTCGCCAACATCATGTGAGGCGTACATTACATATCGTGTTAGGTCACCTTATGCCGAACTTGGAAGTATATCTGATCTGTTTGGAAAAAGCAGATTAGAGATAGCAAGAGCCACTAATCTAACATCAGAGGATACTCC...

Protein

2 records

下载 Protein FASTA

XP_057768478.1
MTISLYTILIIFSLFLIFVISSAASQFVNNTAVTDFRSSADSPTSCEAYITYRVRSPYAELGSISDLFGKSRLEIARATNLTSEDTPLVPNQLLLVPIICTTNGTHYFSNVTYKIKKDDTYYSVQVKAFQNLTEFHVVEEMNPKLNPTNLTVGEEVVFPLFCKCPEVSYKEKGIQFLTTYVWQPGDDVLPVSAMFQTTASDIEMANNNRNFTAAVCLPVLIPEKMPILLQLFPSSASHGKSKRQWILIASSSALALIILL...

XP_057768479.1
MTISLYTILIIFSLFLIFVISSAASQFVNNTAVTDFRSSADSPTSCEAYITYRVRSPYAELGSISDLFGKSRLEIARATNLTSEDTPLVPNQLLLVPIICTTNGTHYFSNVTYKIKKDDTYYSVQVKAFQNLTEFHVVEEMNPKLNPTNLTVGEEVVFPLFCKCPEVSYKEKGIQFLTTYVWQPGDDVLPVSAMFQTTASDIEMANNNRNFTAAVCLPVLIPEKMPILLQLFPSSASHGKSKRQWILIASSSALALIILL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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