Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G001090`

染色体: Chr06 坐标: 10898927-10903682 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G001090`
名称	SmilChr06G001090
描述	uncharacterized SmilChr06G001090
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	10898927 - 10903682 / `+`

ID 对照

NCBI Gene ID	`LOC130988612`
GeneID	`130988612`
locus_tag	`-`
NCBI Name	`LOC130988612`
原始查询	`LOC130988612`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	NAD(P)-binding Rossmann-fold superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:838556]; symbol=AT1G19690; hit=AT1G19690; species=arabidopsis; confidence=high
产物	NAD(P)-binding Rossmann-fold superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:838556]; symbol=AT1G19690; hit=AT1G19690; species=arabidopsis; confidence=high
Arabidopsis	`AT1G19690` (AT1G19690) NAD(P)-binding Rossmann-fold superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:838556] identity=51.6; qcov=0.947; evalue=4.13e-117; confidence=high
Rice	`Os01g0261500` (P0469E09.8-1) - identity=57; qcov=0.419; evalue=2.47e-52; confidence=low
GO	-
KEGG	-
Pfam	PF01370 (Epimerase)
InterPro	-
eggNOG	-
NR	GeneID:130988612

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057768482.1`
2	Chloroplast stroma	叶绿体基质	0.80000	`XP_057768482.1`
3	Nucleus	细胞核	0.00000	`XP_057768482.1`
4	Chromosome	染色体	0.00000	`XP_057768482.1`
5	Centromere	着丝粒	0.00000	`XP_057768482.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:10898975`	`C`	`CA`	1bp_insertion	frameshift_variant	9	A11,A2,B102,B20,B46,B66,B94,C33,C58
`Chr6:10899000`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C11
`Chr6:10899029`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C5
`Chr6:10899106`	`GA`	`G`	1bp_deletion	frameshift_variant	2	B2,C23
`Chr6:10899106`	`GA`	`G`	1bp_deletion	CDS_variant	2	B2,C23
`Chr6:10899141`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C83
`Chr6:10901155`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C85
`Chr6:10901630`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B114
`Chr6:10901709`	`GTC`	`G`	2bp_deletion	frameshift_variant	1	B26
`Chr6:10901709`	`GTC`	`G`	2bp_deletion	CDS_variant	1	B26
`Chr6:10901793`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	B100
`Chr6:10901793`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B100

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057768482.1

356 aa

178

356

Epimerase

PF01370 Epimerase 143-272 aa

XP_057768483.1

356 aa

178

356

Epimerase

PF01370 Epimerase 143-272 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057768482.1`	Pfam	`PF01370`	Epimerase	Family	143	272	8.1e-11	42.5	NAD dependent epimerase/dehydratase family
`XP_057768483.1`	Pfam	`PF01370`	Epimerase	Family	143	272	8.1e-11	42.5	NAD dependent epimerase/dehydratase family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XR_009090151.1
AAAATTTAGCCCCAAATTGAGTGAAACATCACATGCCAATTTCATCTCAACACTTTACAAATATGGAGATTTGCCGCGCTTCGAGGCGTTTGCCGCCGATTAATCTCCGATTTAATCAAACCTCGACGTTCCGGCCGGCAATAGTGAAATGCAATCTCTTCTCTGGAGCAAAAGAACTTCCGGAACTTTCAACGGGCGATCAAATGTTCATTCTTGGAATGGGTTTCGTCGGAAAATTCTTCGCTGCCGATTTGAAGAAC...

XM_057912499.1
TTAAATAAAATTTAGCCCCAAATTGAGTGAAACATCACATGCCAATTTCATCTCAACACTTTACAAATATGGAGATTTGCCGCGCTTCGAGGCGTTTGCCGCCGATTAATCTCCGATTTAATCAAACCTCGACGTTCCGGCCGGCAATAGTGAAATGCAATCTCTTCTCTGGAGCAAAAGAACTTCCGGAACTTTCAACGGGCGATCAAATGTTCATTCTTGGAATGGGTTTCGTCGGAAAATTCTTCGCTGCCGATTTG...

CDS

2 records

下载 CDS FASTA

LOC130988612
ATGCCAATTTCATCTCAACACTTTACAAATATGGAGATTTGCCGCGCTTCGAGGCGTTTGCCGCCGATTAATCTCCGATTTAATCAAACCTCGACGTTCCGGCCGGCAATAGTGAAATGCAATCTCTTCTCTGGAGCAAAAGAACTTCCGGAACTTTCAACGGGCGATCAAATGTTCATTCTTGGAATGGGTTTCGTCGGAAAATTCTTCGCTGCCGATTTGAAGAACAAAGGATGGGTAGTGAGCGGGAGCTGTACAAG...

Protein

2 records

下载 Protein FASTA

XP_057768482.1
MPISSQHFTNMEICRASRRLPPINLRFNQTSTFRPAIVKCNLFSGAKELPELSTGDQMFILGMGFVGKFFAADLKNKGWVVSGSCTSVGKKKQLEELGYSAYAFDANDPQDKVLEVVKNHTHLVISIPPLKGVGDPILCREGLLKSVLKGGRLRWLVYLSSTSVYGDSGGAWVDEDYPVKPESEHARARLVAEEQWLCFGQNLGIAAHVFRLGGIYGPGRSAVDTILKQGPMSKGQKARLLKDYTSRVHVADICQALHAS...

XP_057768483.1
MPISSQHFTNMEICRASRRLPPINLRFNQTSTFRPAIVKCNLFSGAKELPELSTGDQMFILGMGFVGKFFAADLKNKGWVVSGSCTSVGKKKQLEELGYSAYAFDANDPQDKVLEVVKNHTHLVISIPPLKGVGDPILCREGLLKSVLKGGRLRWLVYLSSTSVYGDSGGAWVDEDYPVKPESEHARARLVAEEQWLCFGQNLGIAAHVFRLGGIYGPGRSAVDTILKQGPMSKGQKARLLKDYTSRVHVADICQALHAS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器