Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G001115`

染色体: Chr06 坐标: 11224582-11228715 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G001115`
名称	SmilChr06G001115
描述	uncharacterized SmilChr06G001115
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	11224582 - 11228715 / `-`

ID 对照

NCBI Gene ID	`LOC130988632`
GeneID	`130988632`
locus_tag	`-`
NCBI Name	`LOC130988632`
原始查询	`LOC130988632`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Cofactor-independent phosphoglycerate mutase [Source:NCBI gene (formerly Entrezgene);Acc:822862]; symbol=AT3G30841; hit=AT3G30841; species=arabidopsis; confidence=high
产物	Cofactor-independent phosphoglycerate mutase [Source:NCBI gene (formerly Entrezgene);Acc:822862]; symbol=AT3G30841; hit=AT3G30841; species=arabidopsis; confidence=high
Arabidopsis	`AT3G30841` (AT3G30841) Cofactor-independent phosphoglycerate mutase [Source:NCBI gene (formerly Entrezgene);Acc:822862] identity=80.7; qcov=0.988; evalue=0; confidence=high
Rice	`Os12g0536000` - identity=78.6; qcov=0.892; evalue=0; confidence=high
GO	GO:0046537 (GO:0046537); GO:0046872 (metal ion binding)
KEGG	-
Pfam	PF01676 (Metalloenzyme); PF10143 (PhosphMutase)
InterPro	-
eggNOG	-
NR	GeneID:130988632

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057768508.1`
2	Cytoplasm	细胞质	0.80000	`XP_057768508.1`
3	Nucleus	细胞核	0.20000	`XP_057768508.1`
4	Nucleoplasm	核质	0.20000	`XP_057768508.1`
5	Chromosome	染色体	0.00000	`XP_057768508.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:11225057`	`T`	`TCA`	2bp_insertion	frameshift_variant	4	A21,B16,B28,C23
`Chr6:11225057`	`T`	`TCA`	2bp_insertion	CDS_variant	4	A21,B16,B28,C23
`Chr6:11225059`	`TTC`	`T`	2bp_deletion	frameshift_variant	4	A21,B16,B28,C23
`Chr6:11225059`	`TTC`	`T`	2bp_deletion	CDS_variant	4	A21,B16,B28,C23
`Chr6:11225124`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B84
`Chr6:11225867`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B16,C23
`Chr6:11225996`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B37
`Chr6:11226047`	`TG`	`T`	1bp_deletion	frameshift_variant	1	C2
`Chr6:11226047`	`TG`	`T`	1bp_deletion	CDS_variant	1	C2
`Chr6:11226230`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C22,C86
`Chr6:11226696`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B127,B3,B69,D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057768508.1

493 aa

246

493

Metalloenzyme

PhosphMutase

Metalloenzyme

PF01676 Metalloenzyme 10-284 aa PF10143 PhosphMutase 45-220 aa PF01676 Metalloenzyme 327-405 aa

XP_057768509.1

493 aa

246

493

Metalloenzyme

PhosphMutase

Metalloenzyme

PF01676 Metalloenzyme 10-284 aa PF10143 PhosphMutase 45-220 aa PF01676 Metalloenzyme 327-405 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057768508.1`	Pfam	`PF01676`	Metalloenzyme	Family	10	284	5.6e-26	92.3	Metalloenzyme superfamily
`XP_057768508.1`	Pfam	`PF10143`	PhosphMutase	Family	45	220	3.2e-53	180.9	2,3-bisphosphoglycerate-independent phosphoglycerate mutase
`XP_057768508.1`	Pfam	`PF01676`	Metalloenzyme	Family	327	405	5.6e-26	92.3	Metalloenzyme superfamily
`XP_057768509.1`	Pfam	`PF01676`	Metalloenzyme	Family	10	284	5.6e-26	92.3	Metalloenzyme superfamily
`XP_057768509.1`	Pfam	`PF10143`	PhosphMutase	Family	45	220	3.2e-53	180.9	2,3-bisphosphoglycerate-independent phosphoglycerate mutase
`XP_057768509.1`	Pfam	`PF01676`	Metalloenzyme	Family	327	405	5.6e-26	92.3	Metalloenzyme superfamily

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057912526.1
TTCTTCTCTCACTCCTCTCTCTCAGCAACCGGACACACCATCATCTCTCTAACCTCTCGTCGTCTGTCTCACTTCATCTATCTCTCCCCTTGCTATACACACCAAAACAGAAACCCTCCTTCACGAATTCCGGCGAGATCCGCCATTTAACTTCGCGCGTTTCTCCCCACTGATTTCGCCACCTCGCATGCTCCCCTTTCCATTTTCTTTGGCCAGGCATTAAGTTGTTTCTTCTAAAATTGGGGCGTGGCATTTACCTT...

XM_057912525.1
TTATGCTTAAAATTATTGCTAAAATCACATCTGAAATTTTGAATTTGGTTGAAATCACGTTTATTTAGATTCGGAATTTTGGAAGTGAAATTGACCTGAAATTTTGGAGAACAAAACTGTCAAAATTTTATAGATTCGGAATAAAGAAAGTAGGGGTGGAAGTGAAAAAGTTTGAAATTTATGGGGTCAAAATAGGAACCACGAAATTCTCTTTGGGGGACCGAGAATTGCATAAAAACTACGCTACCTGTGTACACTTC...

CDS

2 records

下载 CDS FASTA

LOC130988632
ATGGTTAACTCAAAGGAGCCAAAGCGACGGGTTGCTTTTATTCTAATTGATGGGGTGGGAGATGTATCACTGCCAAAGTTTGGTTACAAGACTCCCTTGCAAATTGCCAATATACCTAATTTGGATGCAATTGCATCGGCTGGCGTCAACGGTCTAATGGACCCCGTCGAAGTAGGCTTAGGCTGTGGAAGTGATACTGCACATCTGTCTCTTCTCGGCTATGATCCTAGAACATATTATCGAGGTCGAGGTGCATTTGA...

Protein

2 records

下载 Protein FASTA

XP_057768508.1
MVNSKEPKRRVAFILIDGVGDVSLPKFGYKTPLQIANIPNLDAIASAGVNGLMDPVEVGLGCGSDTAHLSLLGYDPRTYYRGRGAFESMGAGLAMSPGDIAFKSNFATLDESTGVVTSRRADRHFEEEGPVLCAALDGLKLPSFPQYEVRVRYATEHRCGVVVKGPKLSGNISGTDPLKDNRLLLQAQPLDGSDEAKNTAAVVNELSKEISRILVGHPVNARRVAEGKNIANVVLLRGCGIRIEVPPFEKIHGLRPCMVA...

XP_057768509.1
MVNSKEPKRRVAFILIDGVGDVSLPKFGYKTPLQIANIPNLDAIASAGVNGLMDPVEVGLGCGSDTAHLSLLGYDPRTYYRGRGAFESMGAGLAMSPGDIAFKSNFATLDESTGVVTSRRADRHFEEEGPVLCAALDGLKLPSFPQYEVRVRYATEHRCGVVVKGPKLSGNISGTDPLKDNRLLLQAQPLDGSDEAKNTAAVVNELSKEISRILVGHPVNARRVAEGKNIANVVLLRGCGIRIEVPPFEKIHGLRPCMVA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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