当前解析结果
SmilChr06G001111| 统一新 Gene ID | SmilChr06G001111 |
|---|---|
| 名称 | SmilChr06G001111 |
| 描述 | MYB-like transcription factor EOBII |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 11220750 - 11221893 / + |
| NCBI Gene ID | LOC130988634 |
|---|---|
| GeneID | 130988634 |
| locus_tag | - |
| NCBI Name | LOC130988634 |
| 原始查询 | LOC130988634 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | MYB-like transcription factor EOBII |
| 产物 | MYB-like transcription factor EOBII |
| Arabidopsis | AT3G30210 (MYB121)myb domain protein 121 [Source:NCBI gene (formerly Entrezgene);Acc:822714] identity=54.4; qcov=0.94; evalue=6.52e-62; confidence=high |
| Rice | Os02g0618400 (OsMPS)- identity=69.9; qcov=0.613; evalue=2.89e-63; confidence=high |
| GO | GO:0003700 (DNA-binding transcription factor activity); GO:0005634 (nucleus); GO:0006355 (regulation of DNA-templated transcription); GO:0043565 (sequence-specific DNA binding) |
| KEGG | - |
| Pfam | PF00249 (Myb_DNA-binding); PF13921 (Myb_DNA-bind_6) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130988634 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057768512.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057768512.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057768512.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057768512.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057768512.1 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057768512.1PF00249
Myb_DNA-binding 12-59 aa
PF13921
Myb_DNA-bind_6 15-73 aa
PF00249
Myb_DNA-binding 66-109 aa
PF13921
Myb_DNA-bind_6 69-112 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057768512.1 |
Pfam | PF00249 |
Myb_DNA-binding | Domain | 12 | 59 | 8e-36 | 122.6 | Myb-like DNA-binding domain |
XP_057768512.1 |
Pfam | PF13921 |
Myb_DNA-bind_6 | Domain | 15 | 73 | 1.1e-23 | 83.9 | Myb-like DNA-binding domain |
XP_057768512.1 |
Pfam | PF00249 |
Myb_DNA-binding | Domain | 66 | 109 | 8e-36 | 122.6 | Myb-like DNA-binding domain |
XP_057768512.1 |
Pfam | PF13921 |
Myb_DNA-bind_6 | Domain | 69 | 112 | 1.1e-23 | 83.9 | Myb-like DNA-binding domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。