Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr06G001117

染色体: Chr06 坐标: 11240322-11243031 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr06G001117
名称SmilChr06G001117
描述S-adenosylmethionine decarboxylase proenzyme-like
染色体 / SeqIDChr06 / NC_080392.1
坐标与链方向11240322 - 11243031 / +

ID 对照

NCBI Gene IDLOC130988638
GeneID130988638
locus_tag-
NCBI NameLOC130988638
原始查询LOC130988638

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述S-adenosylmethionine decarboxylase proenzyme-like
产物S-adenosylmethionine decarboxylase proenzyme-like
ArabidopsisAT3G02470 (SAMDC)
S-adenosylmethionine decarboxylase [Source:NCBI gene (formerly Entrezgene);Acc:821214]
identity=60; qcov=0.825; evalue=3.66e-159; confidence=high
RiceOs02g0611200 (SAMDC2)
-
identity=53.5; qcov=0.856; evalue=1.36e-130; confidence=high
GOGO:0004014 (adenosylmethionine decarboxylase activity); GO:0005829 (cytosol); GO:0006597 (spermine biosynthetic process); GO:0008295 (spermidine biosynthetic process)
KEGGsmil00270 (Cysteine and methionine metabolism - Salvia miltiorrhiza (redroot sage)); smil00330 (Arginine and proline metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
PfamPF01536 (SAM_decarbox); PF08132 (AdoMetDC_leader)
InterPro-
eggNOG-
NRGeneID:130988638

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoplasm 细胞质 1.00000 XP_057768515.1
2 Nucleus 细胞核 0.80000 XP_057768515.1
3 Cytosol 细胞质基质 0.80000 XP_057768515.1
4 Chromosome 染色体 0.00000 XP_057768515.1
5 Centromere 着丝粒 0.00000 XP_057768515.1

进入亚细胞定位查询

EMS 诱变突变

该基因暂未检索到已上线的精选 EMS CDS / LoF 突变,或 EMS 突变库仍在构建。

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057768515.1
439 aa
N
1
220
439
AdoMetDC_leader
SAM_decarbox
C
PF08132 AdoMetDC_leader 1-50 aa PF01536 SAM_decarbox 60-383 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057768515.1 Pfam PF08132 AdoMetDC_leader Family 1 50 4.3e-30 104.1 S-adenosyl-l-methionine decarboxylase leader peptide
XP_057768515.1 Pfam PF01536 SAM_decarbox Family 60 383 5e-114 381.7 Adenosylmethionine decarboxylase

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057912532.1
TATTATTATTATTATTATCACCTCACCGCTTCCCCGTTATAATTTAACCCTTCGAAACTCCCATTACTTCTCTTTTCATATCATCTCTGTTCATTTTTCCGCTTCCGCTGTTTCCGCTTCTCTTCAATTCCAAAGTCATCTGAATCTGGTTCATTCTTTTTTTATCCTCCTGCGAGAAAGTAGATCTTCACGGGGTTTTGAATTCTCCTTGTATCCATCAATATTACCTGGAGAATTGAATGAAATATGGAGTCTAAGGG...

CDS

1 records

下载 CDS FASTA
LOC130988638
ATGGAGTCTAAGGGAGGGAAGAAGAAGTCTAGTAGTAGTAAATCCTTATTCTACGAAGCTCCCCTCATTTACAGCATTGAAGACGTTCGACCGCGTGGTGGAATTAAGAAATTCAGATCTGCTGCCTACTCCAACTGTGCTCGGAGACCAGAAATGGCCTCACCAATCTCGGTTATTGGATTCGAAGGTTATGAGAAAAGACTGGAGATTTCGTTCTCTGAGCCTGGAATCTTTGCTGATCCTGGGGCTCATGGTCTCCG...

Protein

1 records

下载 Protein FASTA
XP_057768515.1
MESKGGKKKSSSSKSLFYEAPLIYSIEDVRPRGGIKKFRSAAYSNCARRPEMASPISVIGFEGYEKRLEISFSEPGIFADPGAHGLRSLSKDQLDEILEPAQCTIVSSLKNTEVDSYVLSESSLFVYPYKIILKTCGTTKLLLSVPPILNLADALGLTVSSVKYTRGTFIFPGAQPFPHRHFSDEVAVLDSYFSKRGLSSKACVIGGADQHEKWHVYSACAQPAHNMAPVYTLEVCMTNLDREKASVFFKNRSSSAAVMT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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