Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G001166`

染色体: Chr06 坐标: 11885853-11890169 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G001166`
名称	SmilChr06G001166
描述	E3 ubiquitin-protein ligase At3g02290-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	11885853 - 11890169 / `+`

ID 对照

NCBI Gene ID	`LOC130988686`
GeneID	`130988686`
locus_tag	`-`
NCBI Name	`LOC130988686`
原始查询	`LOC130988686`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	E3 ubiquitin-protein ligase At3g02290-like
产物	E3 ubiquitin-protein ligase At3g02290-like
Arabidopsis	`AT5G15790` (AT5G15790) RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831435] identity=57.8; qcov=1.02; evalue=2.54e-87; confidence=high
Rice	`Os01g0926200` (OsRFP) - identity=50; qcov=1.02; evalue=2.57e-69; confidence=high
GO	GO:0004842 (ubiquitin-protein transferase activity)
KEGG	-
Pfam	PF00097 (zf-C3HC4); PF12678 (zf-rbx1); PF12861 (zf-ANAPC11); PF13445 (zf-RING_UBOX); PF13639 (zf-RING_2); PF13923 (zf-C3HC4_2); PF14634 (zf-RING_5)
InterPro	-
eggNOG	-
NR	GeneID:130988686

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.40000	`XP_057768582.1`
2	Nucleus	细胞核	0.20000	`XP_057768581.1`
3	Cell membrane	细胞膜	0.20000	`XP_057768581.1`
4	Endoplasmic reticulum	内质网	0.20000	`XP_057768581.1`
5	Endoplasmic reticulum membrane	内质网膜	0.20000	`XP_057768581.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:11886987`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B80,B99,C30,C75
`Chr6:11886990`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B114,C17
`Chr6:11887646`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B90,B92
`Chr6:11887698`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr6:11887760`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B80,B99,C30,C75
`Chr6:11888464`	`GTT`	`G`	2bp_deletion	frameshift_variant	37	A10,A15,A19,A22,A7,B108,B110,B118,B119,B12,B13,B136,B18,B30,B36,B4,B54,B67,B71,B72,B81,B82,B9,B90,B92,C13,C17,C38,C42,C46,C52,C61,C63,C74,C81,C86,D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057768581.1

244 aa

122

244

zf-rbx1

zf-ANAPC11

zf-RING_2

zf-RING_UBOX

zf-C3HC4

zf-C3HC4_2

zf-RING_5

PF12678 zf-rbx1 174-217 aa PF12861 zf-ANAPC11 175-220 aa PF13639 zf-RING_2 176-217 aa PF13445 zf-RING_UBOX 177-215 aa PF00097 zf-C3HC4 177-217 aa PF13923 zf-C3HC4_2 177-217 aa PF14634 zf-RING_5 177-219 aa

XP_057768582.1

227 aa

114

227

zf-rbx1

zf-ANAPC11

zf-RING_2

zf-RING_UBOX

zf-C3HC4

zf-C3HC4_2

zf-RING_5

PF12678 zf-rbx1 174-217 aa PF12861 zf-ANAPC11 175-224 aa PF13639 zf-RING_2 176-217 aa PF13445 zf-RING_UBOX 177-215 aa PF00097 zf-C3HC4 177-217 aa PF13923 zf-C3HC4_2 177-217 aa PF14634 zf-RING_5 177-219 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057768581.1`	Pfam	`PF12678`	zf-rbx1	Domain	174	217	7.6e-11	42.8	RING-H2 zinc finger domain
`XP_057768581.1`	Pfam	`PF12861`	zf-ANAPC11	Domain	175	220	4.1e-06	27.4	Anaphase-promoting complex subunit 11 RING-H2 finger
`XP_057768581.1`	Pfam	`PF13639`	zf-RING_2	Domain	176	217	1.1e-11	45.5	Ring finger domain
`XP_057768581.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	177	215	7.2e-07	29.8	RING-type zinc-finger
`XP_057768581.1`	Pfam	`PF00097`	zf-C3HC4	Domain	177	217	1e-06	29.2	Zinc finger, C3HC4 type (RING finger)
`XP_057768581.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	177	217	7.5e-08	32.8	Zinc finger, C3HC4 type (RING finger)
`XP_057768581.1`	Pfam	`PF14634`	zf-RING_5	Domain	177	219	9.5e-07	29.4	zinc-RING finger domain
`XP_057768582.1`	Pfam	`PF12678`	zf-rbx1	Domain	174	217	6.7e-11	43.0	RING-H2 zinc finger domain
`XP_057768582.1`	Pfam	`PF12861`	zf-ANAPC11	Domain	175	224	4.8e-07	30.4	Anaphase-promoting complex subunit 11 RING-H2 finger
`XP_057768582.1`	Pfam	`PF13639`	zf-RING_2	Domain	176	217	9.5e-12	45.7	Ring finger domain
`XP_057768582.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	177	215	3.4e-06	27.6	RING-type zinc-finger
`XP_057768582.1`	Pfam	`PF00097`	zf-C3HC4	Domain	177	217	9.1e-07	29.4	Zinc finger, C3HC4 type (RING finger)
`XP_057768582.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	177	217	5.2e-08	33.3	Zinc finger, C3HC4 type (RING finger)
`XP_057768582.1`	Pfam	`PF14634`	zf-RING_5	Domain	177	219	8.5e-07	29.6	zinc-RING finger domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057912599.1
GCAATGAATATGACTATTCTACTTCACCCACCACCGCGGTAAAGCGTGGTCTTTCATTAACGCGCTTCATTCACATTTTATCTCCTTTTTTTTTCCACATAAAAAAATAGAGGAAATTTTGGATAGATGCATTAAAAAAATAGATCAAATTTGTACAATAATACAATTTCGGAGAATCATAACGCCTCGGATTTCTCGGCTTCTCTCTCTCGCCAGAGTAATCATCTCCTTTGGAGTTCGGATTGGTGAAAATACACATT...

XM_057912598.1
AATGAATATGACTATTCTACTTCACCCACCACCGCGGTAAAGCGTGGTCTTTCATTAACGCGCTTCATTCACATTTTATCTCCTTTTTTTTTCCACATAAAAAAATAGAGGAAATTTTGGATAGATGCATTAAAAAAATAGATCAAATTTGTACAATAATACAATTTCGGAGAATCATAACGCCTCGGATTTCTCGGCTTCTCTCTCTCGCCAGAGTAATCATCTCCTTTGGAGTTCGGATTGGTGAAAATACACATTTT...

CDS

2 records

下载 CDS FASTA

LOC130988686
ATGGGTGCTGCTTGTTGCTGCTTAAGGGATGACTGGGAAGATTTTGCTAACCCGAACAACTCGATTTATAGGAACTGTATATGCCTCCATTGCTTCGTTCAGAATTTCTTGTATCTGTATGCATCACTGTTTCACAGAGGAGAAGAACGTGCCTTACCATCGTCCTCTCAGGGGACAGCTTCTTTGAGTTCTTCAGCATCGATTGATAACTCTCTACCTGATATGTTTCGCCCTCCTCCAAGACCTCTGCCTTATGACGC...

Protein

2 records

下载 Protein FASTA

XP_057768581.1
MGAACCCLRDDWEDFANPNNSIYRNCICLHCFVQNFLYLYASLFHRGEERALPSSSQGTASLSSSASIDNSLPDMFRPPPRPLPYDADPRYFRLQRDGLVSRREKGSSHAHEETEPLRSSEVDEESESVSTKSKWNEFTCEEASKEYNSKSSLKLSTAKPAIGFAHIYTSSEDEDVCPTCLEEYTKENPKILTQCSHHFHLGCIYEWMERSDNCPVCGKVMPDLSILFLLTVSWCWHYSFSWLF

XP_057768582.1
MGAACCCLRDDWEDFANPNNSIYRNCICLHCFVQNFLYLYASLFHRGEERALPSSSQGTASLSSSASIDNSLPDMFRPPPRPLPYDADPRYFRLQRDGLVSRREKGSSHAHEETEPLRSSEVDEESESVSTKSKWNEFTCEEASKEYNSKSSLKLSTAKPAIGFAHIYTSSEDEDVCPTCLEEYTKENPKILTQCSHHFHLGCIYEWMERSDNCPVCGKVMAFDETT

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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