Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G001170`

染色体: Chr06 坐标: 11915987-11919157 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G001170`
名称	SmilChr06G001170
描述	uncharacterized SmilChr06G001170
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	11915987 - 11919157 / `-`

ID 对照

NCBI Gene ID	`LOC130988691`
GeneID	`130988691`
locus_tag	`-`
NCBI Name	`LOC130988691`
原始查询	`LOC130988691`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	small acidic-like protein [Source:NCBI gene (formerly Entrezgene);Acc:821238]; symbol=AT3G02220; hit=AT3G02220; species=arabidopsis; confidence=high
产物	small acidic-like protein [Source:NCBI gene (formerly Entrezgene);Acc:821238]; symbol=AT3G02220; hit=AT3G02220; species=arabidopsis; confidence=high
Arabidopsis	`AT3G02220` (AT3G02220) small acidic-like protein [Source:NCBI gene (formerly Entrezgene);Acc:821238] identity=69; qcov=0.891; evalue=7.54e-84; confidence=high
Rice	`Os01g0763000` - identity=60.3; qcov=0.958; evalue=2.94e-71; confidence=high
GO	-
KEGG	-
Pfam	PF10217 (DUF2039)
InterPro	-
eggNOG	-
NR	GeneID:130988691

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057768587.1`
2	Nucleoplasm	核质	1.00000	`XP_057768588.1`
3	Cytoplasm	细胞质	0.60000	`XP_057768587.1`
4	Cytosol	细胞质基质	0.60000	`XP_057768587.1`
5	Nucleolus	核仁	0.20000	`XP_057768587.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:11916288`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B64,C43,C6,C87
`Chr6:11917908`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B35
`Chr6:11917909`	`G`	`A`	EMS_canonical_SNV	stop_gained	37	A13,A16,A25,A5,A9,B107,B120,B124,B136,B137,B138,B139,B19,B26,B32,B34,B45,B49,B5,B50,B53,B59,B60,B88,C26,C35,C36,C4,C42,C43,C46,C48,C53,C70,C78,C83,D10
`Chr6:11917926`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C22
`Chr6:11918063`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B64,C43,C6,C87
`Chr6:11918243`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A3,C61
`Chr6:11918880`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B139,B8,B89,C10
`Chr6:11918992`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B1
`Chr6:11919003`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B107,B135,B29,B84,C12
`Chr6:11919020`	`C`	`T`	EMS_canonical_SNV	stop_gained	208	A1,A13,A14,A15,A16,A18,A19,A2,A20,A22,A23,A24,A25,A3,A4,A5,A7,A8,A9,B1,B10,B100,B102,B104,B105,B106,B107,B108,B11,B110,B111,B112,B113,B114,B115,B119,B12,B120,B121,B122,B123,B124,B125,B126,B127,B128,B129,B13,B130,B131,B132,B133,B135,B136,B137,B138,B139,B14,B140,B17,B18,B19,B20,B21,B23,B25,B26,B28,B29,B3,B30,B32,B33,B34,B35,B36,B37,B38,B39,B4,B40,B41,B42,B43,B44,B45,B47,B48,B49,B5,B51,B52,B53,B54,B55,B57,B58,B59,B6,B60,B61,B62,B63,B64,B65,B66,B68,B69,B70,B71,B72,B76,B78,B79,B82,B83,B84,B85,B86,B88,B89,B9,B90,B92,B93,B94,B95,B96,B98,C1,C10,C11,C12,C14,C15,C16,C17,C18,C19,C20,C21,C22,C24,C25,C27,C28,C29,C3,C30,C31,C33,C34,C36,C38,C39,C4,C40,C41,C42,C43,C44,C45,C46,C47,C48,C5,C50,C52,C53,C54,C55,C56,C58,C6,C60,C62,C63,C65,C67,C69,C70,C71,C73,C74,C75,C76,C77,C78,C79,C8,C80,C81,C82,C83,C84,C85,C86,C87,C9,D1,D10,D2,D3,D4,D5,D6,D7,D8
`Chr6:11919037`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057768587.1

201 aa

100

201

DUF2039

PF10217 DUF2039 10-99 aa

XP_057768588.1

192 aa

192

DUF2039

PF10217 DUF2039 10-99 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057768587.1`	Pfam	`PF10217`	DUF2039	Family	10	99	1e-28	100.1	Uncharacterized conserved protein (DUF2039)
`XP_057768588.1`	Pfam	`PF10217`	DUF2039	Family	10	99	1.1e-28	100.0	Uncharacterized conserved protein (DUF2039)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057912605.1
CGAGATACTCCTCTAATATTTAACTGGGAGTGGTATGAAATAAAGGTTAGGTGAAGCAGAGAGCGTTGCCGTCGCGTAGGTCTTGAAGATGAGTAGCGGCGGTAGAGGTCCGCCCAAGCACCAAAACAAATTCGCCTGGAAGCCTAACGGCGGCGTTAAGATCAACCCTACCGAATTAGGGGGCCAATTGAGGCCGTTTTCAGATATAACTGGAGTTTGCTTTCGCTGTAAAGAACAGATCGATTGGAAACGAAAATATG...

XM_057912604.1
ACTCCTCTAATATTTAACTGGGAGTGGTATGAAATAAAGGTTAGGTGAAGCAGAGAGCGTTGCCGTCGCGTAGGTCTTGAAGATGAGTAGCGGCGGTAGAGGTCCGCCCAAGCACCAAAACAAATTCGCCTGGAAGCCTAACGGCGGCGTTAAGATCAACCCTACCGAATTAGGGGGCCAATTGAGGCCGTTTTCAGATATAACTGGAGTTTGCTTTCGCTGTAAAGAACAGATCGATTGGAAACGAAAATATGGAAAAT...

CDS

2 records

下载 CDS FASTA

LOC130988691
ATGAGTAGCGGCGGTAGAGGTCCGCCCAAGCACCAAAACAAATTCGCCTGGAAGCCTAACGGCGGCGTTAAGATCAACCCTACCGAATTAGGGGGCCAATTGAGGCCGTTTTCAGATATAACTGGAGTTTGCTTTCGCTGTAAAGAACAGATCGATTGGAAACGAAAATATGGAAAATATAAGCCTCTCTCTGAACCTGCAAAATGTCAACGGTGTTCCAAGAGGAACGTTCGGCAAGCTTATCACAATCTCTGTGCTGG...

Protein

2 records

下载 Protein FASTA

XP_057768587.1
MSSGGRGPPKHQNKFAWKPNGGVKINPTELGGQLRPFSDITGVCFRCKEQIDWKRKYGKYKPLSEPAKCQRCSKRNVRQAYHNLCAGCAKEHHVCAKCSCRVDKIIGRDILEVEAEQKTLEEAIKNARERDRRSLLRAVSFFILNKHFCIQKSFACILKFILCSMFCCVSGQKRRGISLRKELKALLDLLAHSIDWRLYII

XP_057768588.1
MSSGGRGPPKHQNKFAWKPNGGVKINPTELGGQLRPFSDITGVCFRCKEQIDWKRKYGKYKPLSEPAKCQRCSKRNVRQAYHNLCAGCAKEHHVCAKCSCRVDKIIGRDILEVEAEQKTLEEAIKNARERDRRSLLRAMNKEKSKGSAATPAAADASKAGDLFTAQSLEEYAEHSRDGEDEHGGQDLPKVVG

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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