Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G001171`

染色体: Chr06 坐标: 11923120-11926429 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G001171`
名称	SmilChr06G001171
描述	uncharacterized SmilChr06G001171
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	11923120 - 11926429 / `-`

ID 对照

NCBI Gene ID	`LOC130988692`
GeneID	`130988692`
locus_tag	`-`
NCBI Name	`LOC130988692`
原始查询	`LOC130988692`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Proteasome component (PCI) domain protein [Source:NCBI gene (formerly Entrezgene);Acc:831413]; symbol=AT5G15610; hit=AT5G15610; species=arabidopsis; confidence=high
产物	Proteasome component (PCI) domain protein [Source:NCBI gene (formerly Entrezgene);Acc:831413]; symbol=AT5G15610; hit=AT5G15610; species=arabidopsis; confidence=high
Arabidopsis	`AT5G15610` (AT5G15610) Proteasome component (PCI) domain protein [Source:NCBI gene (formerly Entrezgene);Acc:831413] identity=63.9; qcov=1.01; evalue=0; confidence=high
Rice	`Os04g0103200` (eIF-3m) - identity=57; qcov=1.01; evalue=6.05e-177; confidence=high
GO	GO:0002183 (cytoplasmic translational initiation); GO:0003743 (translation initiation factor activity); GO:0005737 (cytoplasm); GO:0005852 (eukaryotic translation initiation factor 3 complex)
KEGG	-
Pfam	PF01399 (PCI); PF18005 (eIF3m_C_helix)
InterPro	-
eggNOG	-
NR	GeneID:130988692

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057768589.1`
2	Cytosol	细胞质基质	0.20000	`XP_057768589.1`
3	Nucleus	细胞核	0.00000	`XP_057768589.1`
4	Chromosome	染色体	0.00000	`XP_057768589.1`
5	Centromere	着丝粒	0.00000	`XP_057768589.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:11923367`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B80
`Chr6:11923371`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A14,D1,D11
`Chr6:11923680`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B82
`Chr6:11923681`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr6:11923833`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B26,C42
`Chr6:11924196`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B120
`Chr6:11924220`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A3,C61
`Chr6:11924250`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr6:11924737`	`TG`	`T`	1bp_deletion	frameshift_variant	1	A16
`Chr6:11924737`	`TG`	`T`	1bp_deletion	CDS_variant	1	A16
`Chr6:11924782`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B23,B37
`Chr6:11924798`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C19

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057768589.1

410 aa

205

410

PCI

eIF3m_C_helix

PF01399 PCI 282-359 aa PF18005 eIF3m_C_helix 363-391 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057768589.1`	Pfam	`PF01399`	PCI	Domain	282	359	1e-11	45.6	PCI domain
`XP_057768589.1`	Pfam	`PF18005`	eIF3m_C_helix	Domain	363	391	3.6e-11	43.3	eIF3 subunit M, C-terminal helix

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057912606.1
AAAAATTCTTAGAGATTTATACACATTTACATATTTACCCCTTATTCATTGCCAAAATACTTTTCCATCCTCAAATTAGGGTTTTTTCTGCCTCAATCTCACTATCAATCCTCTCTCTCTCCACCATCAGAGCTCTCTGCCGAGCATTTCCTAATTAGCAATCTGCAGAGAATTCTGATTTTTTCTCTCACAGCTTTGGAAAGATGACGACAATTGTCCCTACATCGGAAGAAGATCCCACTCTCTCCGTCGTGCGGTGC...

CDS

1 records

下载 CDS FASTA

LOC130988692
ATGACGACAATTGTCCCTACATCGGAAGAAGATCCCACTCTCTCCGTCGTGCGGTGCGTTGCCGAGTTGTCGTGGGCCGACGCCGGTCCAGAGGTAGCAGAGGGACATGTTAGTGGATTGTTGGTGGAGGCGCAAGAATGTATAATACAAACGAGGTGGTTGGATTTGGCTTCTTTGATTCTTGCTTCTGCTGATGTCATTTTCTCCAAGGCTTCTGAGAAAGACCTTGAATGCATTTACACTGTTGTCTGCCACCTTGT...

Protein

1 records

下载 Protein FASTA

XP_057768589.1
MTTIVPTSEEDPTLSVVRCVAELSWADAGPEVAEGHVSGLLVEAQECIIQTRWLDLASLILASADVIFSKASEKDLECIYTVVCHLVKKPESLDQVHEMAELIATKVTQQPNDKPGLRLKILFNLYNLLENPYSQFFVYMKALNLAVSGKVTEHVVPSFTKMDDFLSEWNLGTKDKRDLFLTVANVLKDSKSPAKESFDYLVKYLETFSGDDAVALAEAKEEAVRAVVEFVKSPDMFQGDLLDIPAIAQLEKDSTYALVY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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