Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G001200`

染色体: Chr06 坐标: 12276718-12279264 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G001200`
名称	SmilChr06G001200
描述	F-box/LRR-repeat/kelch-repeat protein At2g27520-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	12276718 - 12279264 / `+`

ID 对照

NCBI Gene ID	`LOC130988718`
GeneID	`130988718`
locus_tag	`-`
NCBI Name	`LOC130988718`
原始查询	`LOC130988718`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	F-box/LRR-repeat/kelch-repeat protein At2g27520-like
产物	F-box/LRR-repeat/kelch-repeat protein At2g27520-like
Arabidopsis	`AT1G12170` (AT1G12170) F-box family protein [Source:NCBI gene (formerly Entrezgene);Acc:837770] identity=25; qcov=0.552; evalue=1.18e-08; confidence=low
Rice	`Os09g0448100` (OsFbox489) - identity=24.6; qcov=0.721; evalue=3.29e-12; confidence=weak
GO	GO:0003857 ((3S)-3-hydroxyacyl-CoA dehydrogenase (NAD+) activity); GO:0005777 (peroxisome); GO:0006635 (fatty acid beta-oxidation); GO:0070403 (NAD+ binding)
KEGG	-
Pfam	PF02737 (3HCDH_N); PF07734 (FBA_1); PF08268 (FBA_3)
InterPro	-
eggNOG	-
NR	GeneID:130988718

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057768629.1`
2	Nucleus	细胞核	0.80000	`XP_057768631.1`
3	Cytosol	细胞质基质	0.20000	`XP_057768629.1`
4	Endoplasmic reticulum	内质网	0.20000	`XP_057768629.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:12277231`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B101
`Chr6:12277319`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B101
`Chr6:12277522`	`T`	`TA`	1bp_insertion	frameshift_variant	1	B104
`Chr6:12277522`	`T`	`TA`	1bp_insertion	CDS_variant	1	B104
`Chr6:12277675`	`GA`	`G`	1bp_deletion	frameshift_variant	1	A8
`Chr6:12277675`	`GA`	`G`	1bp_deletion	CDS_variant	1	A8
`Chr6:12277707`	`G`	`GT`	1bp_insertion	frameshift_variant	10	A8,B127,B128,B133,B18,B87,C11,C69,C76,D8
`Chr6:12277950`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C17
`Chr6:12278057`	`C`	`T`	EMS_canonical_SNV	stop_gained	63	A19,A20,A24,A3,A8,B10,B102,B106,B109,B11,B112,B114,B118,B125,B126,B127,B128,B130,B133,B134,B14,B17,B18,B19,B2,B38,B39,B40,B41,B44,B46,B48,B53,B56,B61,B63,B72,B74,B77,B87,B96,B97,C11,C20,C22,C24,C25,C28,C29,C32,C39,C41,C54,C56,C61,C63,C65,C68,C69,C73,C76,C79,D8
`Chr6:12278089`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C72
`Chr6:12278311`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C76
`Chr6:12278326`	`G`	`GT`	1bp_insertion	frameshift_variant	2	A20,C75

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057768629.1

474 aa

237

474

FBA_3

FBA_1

3HCDH_N

PF08268 FBA_3 17-245 aa PF07734 FBA_1 45-238 aa PF02737 3HCDH_N 394-470 aa

XP_057768631.1

438 aa

219

438

FBA_3

FBA_1

PF08268 FBA_3 17-245 aa PF07734 FBA_1 45-246 aa

XP_057768632.1

384 aa

192

384

FBA_3

FBA_1

PF08268 FBA_3 17-245 aa PF07734 FBA_1 45-238 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057768629.1`	Pfam	`PF08268`	FBA_3	Repeat	17	245	3.1e-16	60.0	F-box associated beta propeller domain
`XP_057768629.1`	Pfam	`PF07734`	FBA_1	Repeat	45	238	3.9e-23	82.7	F-box associated beta propeller domain
`XP_057768629.1`	Pfam	`PF02737`	3HCDH_N	Domain	394	470	3.8e-08	34.2	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
`XP_057768631.1`	Pfam	`PF08268`	FBA_3	Repeat	17	245	2.6e-16	60.3	F-box associated beta propeller domain
`XP_057768631.1`	Pfam	`PF07734`	FBA_1	Repeat	45	246	3.5e-23	82.8	F-box associated beta propeller domain
`XP_057768632.1`	Pfam	`PF08268`	FBA_3	Repeat	17	245	1.8e-16	60.8	F-box associated beta propeller domain
`XP_057768632.1`	Pfam	`PF07734`	FBA_1	Repeat	45	238	2.4e-23	83.3	F-box associated beta propeller domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XR_009090187.1
AAAAAAAAAAAAAAAAAACTTTTGAAAGGTAAATATATTAGGGCTATAGGGATTCGCCCATTTTCCATAACAAAAGAAAAGGGAGAAGATTCTAGGATAAAGGGATTCGCCGAATTTGGTTGGCTTGAAGCGTTACTAAGAATGGATGAGCTTGTTCTGAAATCTTTTAACGGCGGTGGCGATAATGAGCATTATTTATCTATTATTTCTCCCCAAGACATACCTCCCAAGGAAGGCTTTGAAAATATCCATCTTTATTT...

XR_009090188.1
AAAAAAAAAAAAAAAAAACTTTTGAAAGGTAAATATATTAGGGCTATAGGGATTCGCCCATTTTCCATAACAAAAGAAAAGGGAGAAGATTCTAGGATAAAGGGATTCGCCGAATTTGGTTGGCTTGAAGCGTTACTAAGAATGGATGAGCTTGTTCTGAAATCTTTTAACGGCGGTGGCGATAATGAGCATTATTTATCTATTATTTCTCCCCAAGACATACCTCCCAAGGAAGGCTTTGAAAATATCCATCTTTATTT...

CDS

3 records

下载 CDS FASTA

LOC130988718
ATGGATGAGCTTGTTCTGAAATCTTTTAACGGCGGTGGCGATAATGAGCATTATTTATCTATTATTTCTCCCCAAGACATACCTCCCAAGGAAGGCTTTGAAAATATCCATCTTTATTTTTATGATAAAAATAAAGAAAATGTTTCCGGTAATATTTGTGGTGGGCTGTTGTATTTGGATGATTTTAATGGCAAAAGTGTTGTGTGCAACTTAACAACTAAAGAGTTCAAATTTCTTTGTCCGCCCAAGAAAGCCTCTCC...

Protein

3 records

下载 Protein FASTA

XP_057768629.1
MDELVLKSFNGGGDNEHYLSIISPQDIPPKEGFENIHLYFYDKNKENVSGNICGGLLYLDDFNGKSVVCNLTTKEFKFLCPPKKASPCWDNFNGSGLGYDSESGDYKVIRSYTRCNCDPDDENDREGCRGGRHTKTELYSLQSDSWKEIPNPNSHIFPECGVSIMGNCYWTVVSHDGSTFSILSFNFSEESFSCIPSPPVTMKKFMYVVVECDGFLGAIVFERKSKRGVKSFQLWVWKESSWVKSFGVALRGIEKPLGLK...

XP_057768631.1
MDELVLKSFNGGGDNEHYLSIISPQDIPPKEGFENIHLYFYDKNKENVSGNICGGLLYLDDFNGKSVVCNLTTKEFKFLCPPKKASPCWDNFNGSGLGYDSESGDYKVIRSYTRCNCDPDDENDREGCRGGRHTKTELYSLQSDSWKEIPNPNSHIFPECGVSIMGNCYWTVVSHDGSTFSILSFNFSEESFSCIPSPPVTMKKFMYVVVECDGFLGAIVFERKSKRGVKSFQLWVWKESSWVKSFGVALRGIEKPLGLK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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