当前解析结果
SmilChr06G001206| 统一新 Gene ID | SmilChr06G001206 |
|---|---|
| 名称 | SmilChr06G001206 |
| 描述 | ureide permease 1-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 12337413 - 12341753 / + |
| NCBI Gene ID | LOC130988723 |
|---|---|
| GeneID | 130988723 |
| locus_tag | - |
| NCBI Name | LOC130988723 |
| 原始查询 | LOC130988723 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ureide permease 1-like |
| 产物 | ureide permease 1-like |
| Arabidopsis | AT2G03590 (UPS1)ureide permease 1 [Source:NCBI gene (formerly Entrezgene);Acc:814888] identity=60.8; qcov=1.07; evalue=1.06e-158; confidence=high |
| Rice | Os12g0502800- identity=58.5; qcov=1.09; evalue=1.9e-155; confidence=high |
| GO | GO:0005274 (allantoin:proton symporter activity); GO:0015505 (uracil:monoatomic cation symporter activity); GO:0016020 (membrane); GO:0071705 (nitrogen compound transport) |
| KEGG | - |
| Pfam | PF07168 (Ureide_permease) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130988723 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole membrane | 液泡膜 | 0.60000 | XP_057768637.1 |
| 2 | Cell membrane | 细胞膜 | 0.40000 | XP_057768634.1 |
| 3 | Vacuole | 液泡 | 0.40000 | XP_057768634.1 |
| 4 | Golgi apparatus | 高尔基体 | 0.20000 | XP_057768636.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057768636.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:12337485 |
TG |
T |
1bp_deletion | frameshift_variant | 7 | A18,B25,C31,C4,C57,C6,D9 |
Chr6:12338359 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B139,B32,C4,C48 |
Chr6:12339112 |
T |
TA |
1bp_insertion | frameshift_variant | 1 | B68 |
Chr6:12339112 |
T |
TA |
1bp_insertion | CDS_variant | 1 | B68 |
Chr6:12339394 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A3,C61 |
Chr6:12340039 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr6:12340100 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B84 |
Chr6:12340686 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C72 |
Chr6:12340759 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C44,D4 |
Chr6:12340819 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C72 |
Chr6:12340853 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C72 |
Chr6:12340882 |
CT |
C |
1bp_deletion | frameshift_variant | 1 | B103 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057768634.1PF07168
Ureide_permease 41-402 aa
XP_057768636.1PF07168
Ureide_permease 41-401 aa
XP_057768637.1PF07168
Ureide_permease 41-125 aa
PF07168
Ureide_permease 126-369 aa
XP_057768638.1PF07168
Ureide_permease 41-125 aa
PF07168
Ureide_permease 126-368 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057768634.1 |
Pfam | PF07168 |
Ureide_permease | Family | 41 | 402 | 4.2e-180 | 598.9 | Ureide permease |
XP_057768636.1 |
Pfam | PF07168 |
Ureide_permease | Family | 41 | 401 | 3.3e-180 | 599.2 | Ureide permease |
XP_057768637.1 |
Pfam | PF07168 |
Ureide_permease | Family | 41 | 125 | 2.3e-150 | 501.1 | Ureide permease |
XP_057768637.1 |
Pfam | PF07168 |
Ureide_permease | Family | 126 | 369 | 2.3e-150 | 501.1 | Ureide permease |
XP_057768638.1 |
Pfam | PF07168 |
Ureide_permease | Family | 41 | 125 | 1.8e-150 | 501.4 | Ureide permease |
XP_057768638.1 |
Pfam | PF07168 |
Ureide_permease | Family | 126 | 368 | 1.8e-150 | 501.4 | Ureide permease |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA4 records
下载 CDS FASTA4 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。