当前解析结果
SmilChr06G001212| 统一新 Gene ID | SmilChr06G001212 |
|---|---|
| 名称 | SmilChr06G001212 |
| 描述 | chaperone protein ClpB3, chloroplastic |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 12422235 - 12428048 / + |
| NCBI Gene ID | LOC130988729 |
|---|---|
| GeneID | 130988729 |
| locus_tag | - |
| NCBI Name | LOC130988729 |
| 原始查询 | LOC130988729 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | chaperone protein ClpB3, chloroplastic |
| 产物 | chaperone protein ClpB3%2C chloroplastic |
| Arabidopsis | AT5G15450 (CLPB3)casein lytic proteinase B3 [Source:NCBI gene (formerly Entrezgene);Acc:831398] identity=84.8; qcov=0.947; evalue=0; confidence=high |
| Rice | Os03g0426900 (ClpB-c)- identity=84.8; qcov=0.925; evalue=0; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0005737 (cytoplasm); GO:0016887 (ATP hydrolysis activity); GO:0034605 (cellular response to heat); GO:0042026 (protein refolding) |
| KEGG | - |
| Pfam | PF00004 (AAA); PF00158 (Sigma54_activat); PF02861 (Clp_N); PF07724 (AAA_2); PF07728 (AAA_5); PF10431 (ClpB_D2-small); PF17871 (AAA_lid_9) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130988729 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057768646.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 1.00000 | XP_057768646.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057768646.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057768646.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057768646.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:12423619 |
C |
T |
EMS_canonical_SNV | stop_gained | 6 | A25,B108,B124,C20,C53,D11 |
Chr6:12423627 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr6:12423691 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A9,B41,C32 |
Chr6:12423731 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B33,B46,B91,C32 |
Chr6:12423761 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B49,B90,C19,C32,C4 |
Chr6:12426690 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B46 |
Chr6:12426963 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C44 |
Chr6:12427209 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B107 |
Chr6:12427733 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B46 |
Chr6:12427922 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B90,B92 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057768646.1PF02861
Clp_N 88-210 aa
PF00004
AAA 286-417 aa
PF17871
AAA_lid_9 425-527 aa
PF00158
Sigma54_activat 664-806 aa
PF07724
AAA_2 683-851 aa
PF07728
AAA_5 688-811 aa
PF00004
AAA 689-800 aa
PF10431
ClpB_D2-small 858-938 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057768646.1 |
Pfam | PF02861 |
Clp_N | Family | 88 | 210 | 1.1e-35 | 123.3 | Clp repeat (R) N-terminal domain |
XP_057768646.1 |
Pfam | PF00004 |
AAA | Domain | 286 | 417 | 7.2e-24 | 85.4 | ATPase family associated with various cellular activities (AAA) |
XP_057768646.1 |
Pfam | PF17871 |
AAA_lid_9 | Domain | 425 | 527 | 8.1e-34 | 116.4 | AAA lid domain |
XP_057768646.1 |
Pfam | PF00158 |
Sigma54_activat | Domain | 664 | 806 | 6.2e-09 | 36.5 | Sigma-54 interaction domain |
XP_057768646.1 |
Pfam | PF07724 |
AAA_2 | Domain | 683 | 851 | 9.1e-73 | 244.5 | AAA domain (Cdc48 subfamily) |
XP_057768646.1 |
Pfam | PF07728 |
AAA_5 | Domain | 688 | 811 | 1.1e-18 | 68.4 | AAA domain (dynein-related subfamily) |
XP_057768646.1 |
Pfam | PF00004 |
AAA | Domain | 689 | 800 | 7.2e-24 | 85.4 | ATPase family associated with various cellular activities (AAA) |
XP_057768646.1 |
Pfam | PF10431 |
ClpB_D2-small | Domain | 858 | 938 | 1.1e-26 | 93.3 | C-terminal, D2-small domain, of ClpB protein |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。