当前解析结果
SmilChr06G001222| 统一新 Gene ID | SmilChr06G001222 |
|---|---|
| 名称 | SmilChr06G001222 |
| 描述 | phosphate transporter PHO1 homolog 9-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 12598722 - 12602268 / - |
| NCBI Gene ID | LOC130988738 |
|---|---|
| GeneID | 130988738 |
| locus_tag | - |
| NCBI Name | LOC130988738 |
| 原始查询 | LOC130988738 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | phosphate transporter PHO1 homolog 9-like |
| 产物 | phosphate transporter PHO1 homolog 9-like |
| Arabidopsis | AT3G29060 (AT3G29060)EXS (ERD1/XPR1/SYG1) family protein [Source:NCBI gene (formerly Entrezgene);Acc:822550] identity=49.2; qcov=1.09; evalue=0; confidence=high |
| Rice | Os01g0110100 (Pho1)- identity=31.9; qcov=1.1; evalue=3.39e-131; confidence=low |
| GO | GO:0000822 (inositol hexakisphosphate binding); GO:0005737 (cytoplasm); GO:0005794 (Golgi apparatus); GO:0005802 (trans-Golgi network); GO:0005886 (plasma membrane); GO:0006817 (phosphate ion transport); GO:0015114 (GO:0015114); GO:0016036 (cellular response to phosphate starvation) |
| KEGG | - |
| Pfam | PF03105 (SPX); PF03124 (EXS) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130988738 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057768662.1 |
| 2 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057768662.1 |
| 3 | Endoplasmic reticulum membrane | 内质网膜 | 0.20000 | XP_057768662.1 |
| 4 | Endosome | 内体 | 0.20000 | XP_057768662.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057768662.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:12599994 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B77 |
Chr6:12600178 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B78,C14 |
Chr6:12600413 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | D10,D11 |
Chr6:12600451 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr6:12600686 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B99,C30,C75 |
Chr6:12600758 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B78,C13,C14,C85 |
Chr6:12600905 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B50,B90,B92 |
Chr6:12601171 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A1,B65 |
Chr6:12601370 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B137 |
Chr6:12601386 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B137 |
Chr6:12601467 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B137 |
Chr6:12601656 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A7,B33,C82,C9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057768662.1PF03105
SPX 1-272 aa
PF03124
EXS 363-704 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057768662.1 |
Pfam | PF03105 |
SPX | Domain | 1 | 272 | 1.7e-54 | 186.9 | SPX domain |
XP_057768662.1 |
Pfam | PF03124 |
EXS | Family | 363 | 704 | 1.3e-96 | 324.5 | EXS family |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。