Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G002977`

染色体: Chr01 坐标: 48714807-48715728 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G002977`
名称	SmilChr01G002977
描述	uncharacterized SmilChr01G002977
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	48714807 - 48715728 / `-`

ID 对照

NCBI Gene ID	`LOC130988743`
GeneID	`130988743`
locus_tag	`-`
NCBI Name	`LOC130988743`
原始查询	`LOC130988743`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Ran BP2/NZF zinc finger-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:2745562]; symbol=AT2G26695; hit=AT2G26695; species=arabidopsis; confidence=medium
产物	Ran BP2/NZF zinc finger-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:2745562]; symbol=AT2G26695; hit=AT2G26695; species=arabidopsis; confidence=medium
Arabidopsis	`AT2G26695` (AT2G26695) Ran BP2/NZF zinc finger-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:2745562] identity=58.8; qcov=1.01; evalue=5.4e-50; confidence=medium
Rice	`Os02g0203700` (SRZ1) - identity=44; qcov=1.24; evalue=8.14e-38; confidence=medium
GO	GO:0003729 (mRNA binding); GO:0005737 (cytoplasm)
KEGG	-
Pfam	PF00641 (Zn_ribbon_RanBP)
InterPro	-
eggNOG	-
NR	GeneID:130988743

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057768672.1`
2	Cytoplasm	细胞质	1.00000	`XP_057768672.1`
3	Cytosol	细胞质基质	0.60000	`XP_057768672.1`
4	Nucleoplasm	核质	0.60000	`XP_057768680.1`
5	Cytoplasmic granule	细胞质颗粒	0.40000	`XP_057768672.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:48715114`	`AT`	`A`	1bp_deletion	frameshift_variant	1	C53
`Chr1:48715114`	`AT`	`A`	1bp_deletion	CDS_variant	1	C53
`Chr1:48715319`	`GC`	`G`	1bp_deletion	frameshift_variant	1	B114
`Chr1:48715319`	`GC`	`G`	1bp_deletion	CDS_variant	1	B114
`Chr1:48715328`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C47,D11
`Chr1:48715409`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B22,B41
`Chr1:48715474`	`TC`	`T`	1bp_deletion	frameshift_variant	1	C79
`Chr1:48715474`	`TC`	`T`	1bp_deletion	CDS_variant	1	C79

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057768672.1

144 aa

144

Zn_ribbon_RanBP

PF00641 Zn_ribbon_RanBP 51-79 aa PF00641 Zn_ribbon_RanBP 100-129 aa

XP_057768680.1

135 aa

135

Zn_ribbon_RanBP

PF00641 Zn_ribbon_RanBP 51-79 aa PF00641 Zn_ribbon_RanBP 100-129 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057768672.1`	Pfam	`PF00641`	Zn_ribbon_RanBP	Domain	51	79	6.3e-13	48.5	Zn-finger in Ran binding protein and others
`XP_057768672.1`	Pfam	`PF00641`	Zn_ribbon_RanBP	Domain	100	129	6.3e-13	48.5	Zn-finger in Ran binding protein and others
`XP_057768680.1`	Pfam	`PF00641`	Zn_ribbon_RanBP	Domain	51	79	4.6e-13	48.9	Zn-finger in Ran binding protein and others
`XP_057768680.1`	Pfam	`PF00641`	Zn_ribbon_RanBP	Domain	100	129	4.6e-13	48.9	Zn-finger in Ran binding protein and others

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057912697.1
TTTGACAAGTATAAAAACCCCACACCAATTCATTCCCCAAAATCACCAACTCCAAACAACAAAACTAGTTGCTACAACCATTTGATCAGGTGAGAAAACACAGCAGCAGCGAGAAGATGAGCAGGCAAGGAGACTGGATGTGTGGAGCGTGCCAGCATCTGAATTTCTCGAAGCGCGACACGTGCCAGCGGTGCGGGTGCCCCAAGTACGCCGGAGCGGCGGAGGTGGCGGCGTACGGCGGCGCATTGCAGAAGAGCGAG...

XM_057912689.1
CAAAATCACCAACTCCAAACAACAAAACTAGTTGCTACAACCATTTGATCAGGTGAGAAAACACAGCAGCAGCGAGAAGATGAGCAGGCAAGGAGACTGGATGTGTGGAGCGTGCCAGCATCTGAATTTCTCGAAGCGCGACACGTGCCAGCGGTGCGGGTGCCCCAAGTACGCCGGAGCGGCGGAGGTGGCGGCGTACGGCGGCGCATTGCAGAAGAGCGAGGTTTTGGCGGGAGACTGGTATTGTGGCGCCATGAACT...

CDS

2 records

下载 CDS FASTA

LOC130988743
ATGAGCAGGCAAGGAGACTGGATGTGTGGAGCGTGCCAGCATCTGAATTTCTCGAAGCGCGACACGTGCCAGCGGTGCGGGTGCCCCAAGTACGCCGGAGCGGCGGAGGTGGCGGCGTACGGCGGCGCATTGCAGAAGAGCGAGGTTTTGGCGGGAGACTGGTATTGTGGCGCCATGAACTGCGGCGCCCACAACTACGCCAGCAGGACCACCTGCTACAGGTGCTGCGCCTCCAAAGATTATTGCGGTTATGACGCCCG...

Protein

2 records

下载 Protein FASTA

XP_057768672.1
MSRQGDWMCGACQHLNFSKRDTCQRCGCPKYAGAAEVAAYGGALQKSEVLAGDWYCGAMNCGAHNYASRTTCYRCCASKDYCGYDARIMAPAGYAVPGWKTGDWICSRVGCGMHNYASRMECYKCHTPKDYGKLLTLLCKQSIV

XP_057768680.1
MSRQGDWMCGACQHLNFSKRDTCQRCGCPKYAGAAEVAAYGGALQKSEVLAGDWYCGAMNCGAHNYASRTTCYRCCASKDYCGYDARIMAPAGYAVPGWKTGDWICSRVGCGMHNYASRMECYKCHTPKDYGGAM

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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