Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G001311`

染色体: Chr06 坐标: 13598117-13604810 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G001311`
名称	SmilChr06G001311
描述	DEAD-box ATP-dependent RNA helicase 37-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	13598117 - 13604810 / `+`

ID 对照

NCBI Gene ID	`LOC130988760`
GeneID	`130988760`
locus_tag	`-`
NCBI Name	`LOC130988760`
原始查询	`LOC130988760`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	DEAD-box ATP-dependent RNA helicase 37-like
产物	DEAD-box ATP-dependent RNA helicase 37-like
Arabidopsis	`AT2G42520` (AT2G42520) P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818852] identity=77; qcov=0.969; evalue=0; confidence=high
Rice	`Os03g0805200` (OsRH37) - identity=73.4; qcov=0.979; evalue=0; confidence=high
GO	GO:0003723 (RNA binding); GO:0003724 (RNA helicase activity); GO:0005524 (ATP binding); GO:0005634 (nucleus)
KEGG	-
Pfam	PF00270 (DEAD); PF00271 (Helicase_C)
InterPro	-
eggNOG	-
NR	GeneID:130988760

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057768698.1`
2	Cytoplasm	细胞质	1.00000	`XP_057768698.1`
3	Cytoplasmic granule	细胞质颗粒	0.80000	`XP_057768698.1`
4	Stress granule	Stress granule	0.40000	`XP_057768698.1`
5	Nucleoplasm	核质	0.20000	`XP_057768698.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:13599216`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B9,C16,C84
`Chr6:13599452`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A16,B111,B3,C83
`Chr6:13599505`	`GCA`	`G`	2bp_deletion	frameshift_variant	21	A6,A8,B1,B101,B102,B108,B112,B113,B124,B131,B25,B30,B46,B68,B72,B78,B87,C36,C48,C7,D6
`Chr6:13599576`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C30
`Chr6:13599584`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B101
`Chr6:13601523`	`AGC`	`A`	2bp_deletion	frameshift_variant	172	A10,A11,A15,A16,A19,A2,A21,A25,A3,A5,A6,A7,A8,B10,B101,B103,B104,B105,B107,B11,B110,B111,B112,B113,B114,B115,B117,B118,B12,B120,B121,B122,B123,B124,B125,B126,B127,B128,B13,B131,B133,B134,B137,B138,B140,B15,B16,B18,B2,B22,B23,B26,B27,B29,B3,B31,B35,B36,B37,B38,B39,B41,B43,B44,B47,B49,B5,B50,B52,B54,B55,B56,B57,B58,B6,B60,B62,B63,B64,B66,B68,B69,B7,B70,B72,B74,B75,B76,B79,B8,B80,B81,B83,B84,B87,B88,B89,B90,B91,B92,B93,B94,B96,C10,C11,C14,C15,C17,C18,C2,C20,C21,C22,C24,C25,C28,C3,C30,C31,C32,C33,C34,C35,C36,C37,C39,C4,C40,C41,C43,C45,C46,C48,C50,C51,C53,C54,C55,C56,C57,C58,C59,C6,C60,C62,C63,C64,C66,C67,C7,C71,C72,C73,C74,C75,C76,C77,C78,C79,C80,C82,C83,C85,C86,C87,D1,D10,D11,D2,D5,D7,D9
`Chr6:13601528`	`ATG`	`A`	2bp_deletion	frameshift_variant	174	A10,A11,A15,A16,A19,A2,A21,A25,A3,A5,A6,A7,A8,B10,B101,B103,B104,B105,B107,B11,B110,B111,B112,B113,B114,B115,B117,B118,B12,B120,B121,B122,B123,B124,B125,B126,B127,B128,B13,B131,B132,B133,B134,B137,B138,B140,B15,B16,B18,B2,B22,B23,B26,B27,B29,B3,B31,B32,B35,B36,B37,B38,B39,B41,B43,B44,B47,B49,B5,B50,B52,B54,B55,B56,B57,B58,B6,B60,B62,B63,B64,B66,B69,B7,B70,B72,B74,B75,B76,B79,B8,B80,B81,B83,B84,B87,B88,B89,B90,B91,B92,B93,B94,B96,C10,C11,C14,C15,C17,C18,C2,C20,C21,C22,C24,C25,C28,C3,C30,C31,C32,C33,C34,C35,C36,C37,C39,C4,C41,C43,C45,C46,C48,C50,C51,C53,C54,C55,C56,C57,C58,C59,C6,C60,C62,C63,C64,C66,C67,C7,C70,C71,C72,C73,C74,C75,C76,C77,C78,C79,C80,C82,C83,C85,C86,C87,D1,D10,D11,D2,D5,D6,D7,D9
`Chr6:13602044`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr6:13604209`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B37,B43
`Chr6:13604288`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B72
`Chr6:13604364`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A7,C14,C82
`Chr6:13604441`	`A`	`AGG`	2bp_insertion	frameshift_variant	21	A22,A3,A6,B101,B104,B126,B132,B17,B3,B30,B69,B84,B95,C10,C18,C19,C35,C41,C44,C55,C83

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057768698.1

610 aa

305

610

DEAD

Helicase_C

PF00270 DEAD 183-362 aa PF00271 Helicase_C 400-513 aa

XP_057768699.1

610 aa

305

610

DEAD

Helicase_C

PF00270 DEAD 183-362 aa PF00271 Helicase_C 400-513 aa

XP_057768700.1

610 aa

305

610

DEAD

Helicase_C

PF00270 DEAD 183-362 aa PF00271 Helicase_C 400-513 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057768698.1`	Pfam	`PF00270`	DEAD	Domain	183	362	3e-49	167.7	DEAD/DEAH box helicase
`XP_057768698.1`	Pfam	`PF00271`	Helicase_C	Domain	400	513	7.9e-33	113.7	Helicase conserved C-terminal domain
`XP_057768699.1`	Pfam	`PF00270`	DEAD	Domain	183	362	3e-49	167.7	DEAD/DEAH box helicase
`XP_057768699.1`	Pfam	`PF00271`	Helicase_C	Domain	400	513	7.9e-33	113.7	Helicase conserved C-terminal domain
`XP_057768700.1`	Pfam	`PF00270`	DEAD	Domain	183	362	3e-49	167.7	DEAD/DEAH box helicase
`XP_057768700.1`	Pfam	`PF00271`	Helicase_C	Domain	400	513	7.9e-33	113.7	Helicase conserved C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057912717.1
ATATTGTCCGATTTTGAGCTAATAAAACCAGTCCTATATTTTCTCCTCCATTTTTTTTTATTTTATTACTACTATTTGGTAGCTAGGGTTTTCAATAATTCTGGTGTCACCGTCTATCTGCTAAACAGATTCTTCCAAACCCAAATCTTTTGCTGATCTAGCACAGGAGCTTTTAAAATGTGATATCGGAAAGTTGGGATTTTGATTTACTTACAGCCTCTGGGATCGCAGATTTTTTGGAATTAGCTGGAAACGATTTT...

XM_057912716.1
ATATTGTCCGATTTTGAGCTAATAAAACCAGTCCTATATTTTCTCCTCCATTTTTTTTTATTTTATTACTACTATTTGGTAGCTAGGGTTTTCAATAATTCTGGTGTCACCGTCTATCTGCTAAACAGATTCTTCCAAACCCAAATCTTTTGCTGATCTAGCACAGCCTCTGGGATCGCAGATTTTTTGGAATTAGCTGGAAACGATTTTTTGAAGAATTGCTGGGAAAAAAATGAGGTCTTCATGGGCAGATGCTGTTG...

CDS

3 records

下载 CDS FASTA

LOC130988760
ATGAGGTCTTCATGGGCAGATGCTGTTGAGAACTCAGCTGGTGGATCTTCGGATAATGCTGGTACAAGTGGTGGGAATGAACGGCCGTCAGCTGCGGCTAGGTCTGCTTATGTTCCCCCACACCTTAGGAACAGACCTCCGGCGTCTGAGCCACCTGCTCCATCAGTTGGTGGACCTCAATCTTTTAACGATCGGCCTGGTTCTGGTGGACCCACTAGCGGGTCTCGGTGGGGTGGTGGCAGGTCTGATTATGGACGACA...

Protein

3 records

下载 Protein FASTA

XP_057768698.1
MRSSWADAVENSAGGSSDNAGTSGGNERPSAAARSAYVPPHLRNRPPASEPPAPSVGGPQSFNDRPGSGGPTSGSRWGGGRSDYGRQGYGGGGGRGSGGWGGRGGWGGRDREVNPFGNDDVDADAEPAFNEQENSGINFDAYEDIPVETSGGNVPPPVNTFAEIDLGDALNLNIRRCKYVKPTPVQRHAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMTGNFPQRPRGVRTVFPLALILSPTRELSVQIHEEARKF...

XP_057768699.1
MRSSWADAVENSAGGSSDNAGTSGGNERPSAAARSAYVPPHLRNRPPASEPPAPSVGGPQSFNDRPGSGGPTSGSRWGGGRSDYGRQGYGGGGGRGSGGWGGRGGWGGRDREVNPFGNDDVDADAEPAFNEQENSGINFDAYEDIPVETSGGNVPPPVNTFAEIDLGDALNLNIRRCKYVKPTPVQRHAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMTGNFPQRPRGVRTVFPLALILSPTRELSVQIHEEARKF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器