Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G001285`

染色体: Chr06 坐标: 13426213-13431182 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G001285`
名称	SmilChr06G001285
描述	T-complex protein 1 subunit theta
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	13426213 - 13431182 / `-`

ID 对照

NCBI Gene ID	`LOC130988766`
GeneID	`130988766`
locus_tag	`-`
NCBI Name	`LOC130988766`
原始查询	`LOC130988766`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	T-complex protein 1 subunit theta
产物	T-complex protein 1 subunit theta
Arabidopsis	`AT3G03960` (AT3G03960) TCP-1/cpn60 chaperonin family protein [Source:NCBI gene (formerly Entrezgene);Acc:819549] identity=84.2; qcov=1; evalue=0; confidence=high
Rice	`Os03g0804800` - identity=85.6; qcov=1; evalue=0; confidence=high
GO	GO:0005524 (ATP binding); GO:0005832 (chaperonin-containing T-complex); GO:0006457 (protein folding); GO:0016887 (ATP hydrolysis activity); GO:0051082 (GO:0051082); GO:0140662 (ATP-dependent protein folding chaperone)
KEGG	-
Pfam	PF00118 (Cpn60_TCP1)
InterPro	-
eggNOG	-
NR	GeneID:130988766

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057768706.1`
2	Cytosol	细胞质基质	1.00000	`XP_057768706.1`
3	Nucleus	细胞核	0.60000	`XP_057768706.1`
4	Nucleoplasm	核质	0.20000	`XP_057768706.1`
5	Chromosome	染色体	0.00000	`XP_057768707.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:13426489`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A6,C26,C47,C7
`Chr6:13426998`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr6:13427003`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr6:13427020`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr6:13427027`	`A`	`AG`	1bp_insertion	frameshift_variant	1	D11
`Chr6:13427027`	`A`	`AG`	1bp_insertion	CDS_variant	1	D11
`Chr6:13427033`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A16,B111,B3,C83
`Chr6:13427094`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C66,D11
`Chr6:13427994`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B109
`Chr6:13429310`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr6:13429333`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C82,D4
`Chr6:13429336`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057768706.1

545 aa

272

545

Cpn60_TCP1

PF00118 Cpn60_TCP1 39-530 aa

XP_057768707.1

505 aa

252

505

Cpn60_TCP1

PF00118 Cpn60_TCP1 39-505 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057768706.1`	Pfam	`PF00118`	Cpn60_TCP1	Family	39	530	7.3e-161	536.9	TCP-1/cpn60 chaperonin family
`XP_057768707.1`	Pfam	`PF00118`	Cpn60_TCP1	Family	39	505	8.6e-150	500.4	TCP-1/cpn60 chaperonin family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057912723.1
AAACCAATGGAAGAAGAACACCATTTGCGCGTCCTTATTAGAAAAAAGAGAAAAAAAAGAAGAAGTAGAAAAGGCGGTTCATTCGTTTTGATCTAGGGTTGGTTGCTGCTTCTGTTCTGAGATCGAGAGAAAGAAGCACTGCATTTCATTTTCATTTTCACACGAAAATGGTAGGTTTCTCGATGCAGCCCTATGGCATACAGTCCATGCTCAAAGAGGGCCATCGCCATCTCTCCGGCCTCGACGAAGCCGTCATTAAG...

XM_057912724.1
AAGAACACCATTTGCGCGTCCTTATTAGAAAAAAGAGAAAAAAAAGAAGAAGTAGAAAAGGCGGTTCATTCGTTTTGATCTAGGGTTGGTTGCTGCTTCTGTTCTGAGATCGAGAGAAAGAAGCACTGCATTTCATTTTCATTTTCACACGAAAATGGTAGGTTTCTCGATGCAGCCCTATGGCATACAGTCCATGCTCAAAGAGGGCCATCGCCATCTCTCCGGCCTCGACGAAGCCGTCATTAAGAACATCGACGCTT...

CDS

2 records

下载 CDS FASTA

LOC130988766
ATGGTAGGTTTCTCGATGCAGCCCTATGGCATACAGTCCATGCTCAAAGAGGGCCATCGCCATCTCTCCGGCCTCGACGAAGCCGTCATTAAGAACATCGACGCTTGCAAGCAGCTCTCCACCATCACTCGCACCTCCCTCGGCCCAAATGGTATGAATAAGATGGTTATCAATCATTTGGATAAGCTTTTTGTCACAAATGATGCTGCAACAATTGTAAATGAGCTGGAGGTTCAGCATCCTGCAGCCAAGCTTTTGGT...

Protein

2 records

下载 Protein FASTA

XP_057768706.1
MVGFSMQPYGIQSMLKEGHRHLSGLDEAVIKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTVSFAGELLQNAEELIRMGLHPSEIIVGYTKAINKTIEALEELVEKGSENMNVREKDEVIPRMRASVASKQFGQEEKLCSLIAEACIQVCPKNPTNFNVDNVRVAKLLGGGLNNSLVVRGMVLKSDAAGTIKKMENAKVAVFVGGVDTTSTETKGTV...

XP_057768707.1
MVGFSMQPYGIQSMLKEGHRHLSGLDEAVIKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTVSFAGELLQNAEELIRMGLHPSEIIVGYTKAINKTIEALEELVEKGSENMNVREKDEVIPRMRASVASKQFGQEEKLCSLIAEACIQVCPKNPTNFNVDNVRVAKLLGGGLNNSLVVRGMVLKSDAAGTIKKMENAKVAVFVGGVDTTSTETKGTV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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