当前解析结果
SmilChr06G001288| 统一新 Gene ID | SmilChr06G001288 |
|---|---|
| 名称 | SmilChr06G001288 |
| 描述 | uncharacterized SmilChr06G001288 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 13461175 - 13463600 / - |
| NCBI Gene ID | LOC130988796 |
|---|---|
| GeneID | 130988796 |
| locus_tag | - |
| NCBI Name | LOC130988796 |
| 原始查询 | LOC130988796 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Chaperone DnaJ-domain superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831932]; symbol=AT5G18140; hit=AT5G18140; species=arabidopsis; confidence=high |
| 产物 | Chaperone DnaJ-domain superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831932]; symbol=AT5G18140; hit=AT5G18140; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G18140 (AT5G18140)Chaperone DnaJ-domain superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831932] identity=50.57; qcov=0.887; evalue=9.48e-79; confidence=high |
| Rice | Os03g0822800 (OsDjC36)- identity=57.63; qcov=0.209; evalue=6.89e-17; confidence=weak |
| GO | GO:0005737 (cytoplasm); GO:0042026 (protein refolding); GO:0051082 (GO:0051082); GO:0051085 (GO:0051085) |
| KEGG | - |
| Pfam | PF00226 (DnaJ) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130988796 |
| Rank | 定位位置 | 中文 | 五折投票比例 | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057768740.1 |
| 2 | Chloroplast membrane | 叶绿体膜 | 0.80000 | XP_057768740.1 |
| 3 | Chloroplast thylakoid | 类囊体 | 0.80000 | XP_057768741.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:13461522 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C1 |
Chr6:13461629 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B109 |
Chr6:13461730 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B30 |
Chr6:13461812 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr6:13461815 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A14,C24,C72 |
Chr6:13461817 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C81 |
Chr6:13462109 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C17 |
Chr6:13463343 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A23 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057768740.1PF00226
DnaJ 41-102 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057768740.1 |
Pfam | PF00226 |
DnaJ | Domain | 41 | 102 | 2.5e-21 | 76.3 | DnaJ domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。