当前解析结果
SmilChr06G001306| 统一新 Gene ID | SmilChr06G001306 |
|---|---|
| 名称 | SmilChr06G001306 |
| 描述 | NADPH-dependent aldehyde reductase-like protein, chloroplastic |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 13572439 - 13573585 / + |
| NCBI Gene ID | LOC130988797 |
|---|---|
| GeneID | 130988797 |
| locus_tag | - |
| NCBI Name | LOC130988797 |
| 原始查询 | LOC130988797 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | NADPH-dependent aldehyde reductase-like protein, chloroplastic |
| 产物 | NADPH-dependent aldehyde reductase-like protein%2C chloroplastic |
| Arabidopsis | AT3G03980 (AT3G03980)NAD(P)-binding Rossmann-fold superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:819553] identity=67.4; qcov=0.996; evalue=3.06e-126; confidence=high |
| Rice | Os07g0561500- identity=65.2; qcov=0.965; evalue=1.07e-103; confidence=high |
| GO | GO:0016491 (oxidoreductase activity) |
| KEGG | smil00061 (Fatty acid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00780 (Biotin metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01212 (Fatty acid metabolism - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00106 (adh_short); PF08659 (KR); PF13561 (adh_short_C2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130988797 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057768743.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057768743.1 |
| 3 | Peroxisome | 过氧化物酶体 | 0.40000 | XP_057768743.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057768743.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057768743.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:13572597 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C1 |
Chr6:13572734 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A10,C43,C78 |
Chr6:13572768 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A3,B45,B89,C10,C72 |
Chr6:13572885 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr6:13572911 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A3,B45,B89,C10,C72 |
Chr6:13572964 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C1 |
Chr6:13573070 |
GT |
G |
1bp_deletion | frameshift_variant | 1 | B26 |
Chr6:13573070 |
GT |
G |
1bp_deletion | CDS_variant | 1 | B26 |
Chr6:13573095 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B15 |
Chr6:13573157 |
T |
TAG |
2bp_insertion | frameshift_variant | 27 | A1,A16,A9,B108,B111,B131,B139,B17,B25,B61,B83,B98,C10,C12,C16,C27,C32,C35,C49,C58,C61,C63,C67,C68,C71,C8,D11 |
Chr6:13573159 |
TTA |
T |
2bp_deletion | frameshift_variant | 27 | A1,A16,A9,B108,B111,B131,B139,B17,B25,B50,B61,B83,B98,C10,C12,C16,C27,C32,C35,C49,C58,C61,C63,C68,C71,C8,D11 |
Chr6:13573190 |
C |
CGG |
2bp_insertion | frameshift_variant | 22 | A1,A9,B108,B111,B17,B25,B83,C10,C12,C16,C27,C32,C35,C49,C58,C61,C63,C67,C68,C71,C8,D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057768743.1PF00106
adh_short 14-205 aa
PF08659
KR 17-186 aa
PF13561
adh_short_C2 20-258 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057768743.1 |
Pfam | PF00106 |
adh_short | Domain | 14 | 205 | 2.1e-47 | 161.9 | short chain dehydrogenase |
XP_057768743.1 |
Pfam | PF08659 |
KR | Family | 17 | 186 | 7.7e-14 | 52.7 | KR domain |
XP_057768743.1 |
Pfam | PF13561 |
adh_short_C2 | Domain | 20 | 258 | 3.7e-59 | 200.9 | Enoyl-(Acyl carrier protein) reductase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。