Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G001358`

染色体: Chr06 坐标: 14139652-14143904 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G001358`
名称	SmilChr06G001358
描述	protein EMSY-LIKE 1-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	14139652 - 14143904 / `-`

ID 对照

NCBI Gene ID	`LOC130988850`
GeneID	`130988850`
locus_tag	`-`
NCBI Name	`LOC130988850`
原始查询	`LOC130988850`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein EMSY-LIKE 1-like
产物	protein EMSY-LIKE 1-like
Arabidopsis	`AT5G13020` (EML3) Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:831142] identity=45.5; qcov=0.961; evalue=5.67e-98; confidence=high
Rice	`Os08g0328300` - identity=47.5; qcov=1.04; evalue=1.08e-109; confidence=high
GO	GO:0050832 (defense response to fungus)
KEGG	-
Pfam	PF03735 (ENT)
InterPro	-
eggNOG	-
NR	GeneID:130988850

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057768785.1`
2	Chromosome	染色体	0.00000	`XP_057768785.1`
3	Centromere	着丝粒	0.00000	`XP_057768785.1`
4	Chromatin	染色质	0.00000	`XP_057768785.1`
5	Telomere	端粒	0.00000	`XP_057768785.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:14140061`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C14
`Chr6:14140148`	`A`	`AT`	1bp_insertion	frameshift_variant	2	C77,D4
`Chr6:14140148`	`A`	`AT`	1bp_insertion	CDS_variant	2	C77,D4
`Chr6:14140160`	`C`	`CAA`	2bp_insertion	frameshift_variant	129	A1,A10,A14,A19,A20,A21,A22,A23,A3,A4,A6,A7,A8,B1,B10,B101,B102,B103,B109,B113,B114,B117,B119,B12,B122,B126,B127,B128,B13,B132,B135,B136,B139,B14,B140,B15,B16,B17,B19,B2,B24,B25,B26,B27,B29,B3,B32,B33,B34,B36,B4,B40,B44,B45,B47,B48,B49,B53,B55,B56,B57,B59,B61,B64,B67,B69,B7,B70,B72,B74,B79,B8,B81,B82,B84,B85,B87,B89,B93,B94,B95,B96,B98,C10,C13,C15,C18,C19,C2,C27,C30,C31,C32,C34,C38,C4,C40,C41,C42,C43,C44,C45,C46,C5,C56,C57,C58,C6,C61,C65,C68,C70,C71,C72,C73,C75,C78,C8,C80,C82,C84,C9,D10,D11,D2,D5,D6,D7,D9
`Chr6:14140167`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B24,B40,C8
`Chr6:14140174`	`GC`	`G`	1bp_deletion	frameshift_variant	2	A23,D11
`Chr6:14140174`	`GC`	`G`	1bp_deletion	CDS_variant	2	A23,D11
`Chr6:14142312`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B14,B53,D5
`Chr6:14142357`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B4,B68,B69,B91
`Chr6:14142387`	`TG`	`T`	1bp_deletion	frameshift_variant	1	B107
`Chr6:14142387`	`TG`	`T`	1bp_deletion	CDS_variant	1	B107
`Chr6:14142437`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A5,B32,C35

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057768785.1

453 aa

226

453

ENT

PF03735 ENT 48-121 aa

XP_057768786.1

444 aa

222

444

ENT

PF03735 ENT 39-112 aa

XP_057768787.1

423 aa

212

423

ENT

PF03735 ENT 48-121 aa

XP_057768788.1

414 aa

207

414

ENT

PF03735 ENT 39-112 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057768785.1`	Pfam	`PF03735`	ENT	Domain	48	121	1.4e-29	102.6	ENT domain
`XP_057768786.1`	Pfam	`PF03735`	ENT	Domain	39	112	1.4e-29	102.7	ENT domain
`XP_057768787.1`	Pfam	`PF03735`	ENT	Domain	48	121	1.1e-29	103.0	ENT domain
`XP_057768788.1`	Pfam	`PF03735`	ENT	Domain	39	112	1e-29	103.1	ENT domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057912804.1
CCCCATCCCCACCACCACCCCACCCCCCACCAATCCCCTTCAATTCCCGTTCTCATTCCCTCTCGTGAGAGAGGTTTACGATCGACAAAATCTGCCGCATTTTCTCTCTCTAAAAATCTTCTTCCCTGAGCTCGTAGAATCTCTCTCTGGAGACGTTCATCATTCTCCCAAGGCATCAGAGGCGCGGAAAATCTCTCGAGCCATTCTGGGAAATCGTTCCAGTTGGATTGACTTGGCATTTCTATGGAATATGGACTCAT...

XM_057912802.1
CCCCATCCCCACCACCACCCCACCCCCCACCAATCCCCTTCAATTCCCGTTCTCATTCCCTCTCGTGAGAGAGGTTTACGATCGACAAAATCTGCCGCATTTTCTCTCTCTAAAAATCTTCTTCCCTGAGCTCGTAGAATCTCTCTCTGGAGACGTTCATCATTCTCCCAAGGCATCAGAGGCGCGGAAAATCTCTCGAGCCATTCTGGGAAATCGTTCCAGTTGGATTGACTTGGCATTTCTATGGAATATGGACTCAT...

CDS

4 records

下载 CDS FASTA

LOC130988850
ATGGAATATGGACTCATAGACAGCAGCGTGTATAATAGAGGCACAGTAGGAGGTCGTGTGGCAGGGAACGGAAGATCATTTCTACCATCAGCCCCATTTCAAAGGATTCAAATTGATATGGAATACGAAATACATAATCTGGAACAGATTGCATATGGTGCTGTTCTACGAGCTTTCAAAGCACAATCTGATGCTCTTACATGGGAGAAAGAGGGCCTTATAACAGAATTGAGGAAGGAACTGAGGGTATCAGACGATGA...

LOC130988850
ATGGAATATGGACTCATAGACAGCAGCGGCACTGATGATGATAATCCTCAAATAGTGTATAATAGAGGCACAGTAGGAGGTCGTGTGGCAGGGAACGGAAGATCATTTCTACCATCAGCCCCATTTCAAAGGATTCAAATTGATATGGAATACGAAATACATAATCTGGAACAGATTGCATATGGTGCTGTTCTACGAGCTTTCAAAGCACAATCTGATGCTCTTACATGGGAGAAAGAGGGCCTTATAACAGAATTGAG...

Protein

4 records

下载 Protein FASTA

XP_057768785.1
MEYGLIDSSGTDDDNPQIVYNRGTVGGRVAGNGRSFLPSAPFQRIQIDMEYEIHNLEQIAYGAVLRAFKAQSDALTWEKEGLITELRKELRVSDDEHRELLSQVNGDDLIRRIREWREAGGNRNVAPNVPQHINNQLPSPTVSASRKRQKTSLSGNPFNAHSQALLSQPVAGSTLPLNSVVKRGPSSGIGGRRPNVGQPAFTSGKPMQYQFGDHVSSGAPMDDPSESIHESLIGRRVMIRWPADSNFYEAVISEYNPVDG...

XP_057768786.1
MEYGLIDSSVYNRGTVGGRVAGNGRSFLPSAPFQRIQIDMEYEIHNLEQIAYGAVLRAFKAQSDALTWEKEGLITELRKELRVSDDEHRELLSQVNGDDLIRRIREWREAGGNRNVAPNVPQHINNQLPSPTVSASRKRQKTSLSGNPFNAHSQALLSQPVAGSTLPLNSVVKRGPSSGIGGRRPNVGQPAFTSGKPMQYQFGDHVSSGAPMDDPSESIHESLIGRRVMIRWPADSNFYEAVISEYNPVDGRHSLVYDSN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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