Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G001368`

染色体: Chr06 坐标: 14311667-14314646 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G001368`
名称	SmilChr06G001368
描述	FT-interacting protein 1-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	14311667 - 14314646 / `-`

ID 对照

NCBI Gene ID	`LOC130988863`
GeneID	`130988863`
locus_tag	`-`
NCBI Name	`LOC130988863`
原始查询	`LOC130988863`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	FT-interacting protein 1-like
产物	FT-interacting protein 1-like
Arabidopsis	`AT5G06850` (FTIP1) C2 calcium/lipid-binding plant phosphoribosyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:830576] identity=70.5; qcov=1.03; evalue=0; confidence=high
Rice	`Os05g0370600` (OsFTIP7) - identity=65.6; qcov=1.02; evalue=0; confidence=high
GO	-
KEGG	-
Pfam	PF00168 (C2); PF08372 (PRT_C)
InterPro	-
eggNOG	-
NR	GeneID:130988863

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	0.80000	`XP_057768806.1`
2	Endoplasmic reticulum membrane	内质网膜	0.80000	`XP_057768806.1`
3	Cell membrane	细胞膜	0.60000	`XP_057768807.1`
4	Vesicle	囊泡	0.20000	`XP_057768806.1`
5	Endosome	内体	0.20000	`XP_057768806.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:14311806`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr6:14311863`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A14,B35,B92,C23,C42
`Chr6:14312039`	`TA`	`T`	1bp_deletion	frameshift_variant	1	B131
`Chr6:14312039`	`TA`	`T`	1bp_deletion	CDS_variant	1	B131
`Chr6:14312043`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C2,C83
`Chr6:14312478`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B114
`Chr6:14312673`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B110
`Chr6:14313200`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B41,C10,C42
`Chr6:14313215`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B31,B65,C27
`Chr6:14313294`	`C`	`CG`	1bp_insertion	frameshift_variant	19	A11,A2,A6,B131,B31,B36,B42,B53,B56,B61,B90,B92,B96,C33,C40,C46,C47,C50,D2
`Chr6:14313320`	`GC`	`G`	1bp_deletion	frameshift_variant	1	D1
`Chr6:14313320`	`GC`	`G`	1bp_deletion	CDS_variant	1	D1

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057768806.1

793 aa

396

793

PRT_C

PF00168 C2 75-180 aa PF00168 C2 240-343 aa PF00168 C2 393-493 aa PF08372 PRT_C 638-793 aa

XP_057768807.1

764 aa

382

764

PRT_C

PF00168 C2 46-151 aa PF00168 C2 211-314 aa PF00168 C2 364-464 aa PF08372 PRT_C 609-764 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057768806.1`	Pfam	`PF00168`	C2	Domain	75	180	6.1e-63	210.3	C2 domain
`XP_057768806.1`	Pfam	`PF00168`	C2	Domain	240	343	6.1e-63	210.3	C2 domain
`XP_057768806.1`	Pfam	`PF00168`	C2	Domain	393	493	6.1e-63	210.3	C2 domain
`XP_057768806.1`	Pfam	`PF08372`	PRT_C	Family	638	793	2.4e-73	245.8	Plant phosphoribosyltransferase C-terminal
`XP_057768807.1`	Pfam	`PF00168`	C2	Domain	46	151	5.2e-63	210.5	C2 domain
`XP_057768807.1`	Pfam	`PF00168`	C2	Domain	211	314	5.2e-63	210.5	C2 domain
`XP_057768807.1`	Pfam	`PF00168`	C2	Domain	364	464	5.2e-63	210.5	C2 domain
`XP_057768807.1`	Pfam	`PF08372`	PRT_C	Family	609	764	2.3e-73	245.9	Plant phosphoribosyltransferase C-terminal

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057912823.1
AGTGTAAAGCAACCTTTGTCATCATGGATTGTGCCATTGCAACACTTTTTTGGCATAGAAAAAAGCAGCTGATCAAGATCATTTCAAACCTCAAATATTTTCCAAAGAAAATGAATCCCCTGGATGAGTACAGAATCAAGGACACGAAGCCGCGGCTGGGCGAGCGGTGGCCGCACGGCGGCGGGCGCAGCTGGATCGGGGGCGACAAGATCACGACCACCTACGACCTAGTGGAACAGATGTTCTACCTCTACGTCCGC...

XM_057912824.1
ACAAATTCTCAATAGTCTCATTCAAATTTCCCTCCCTTAATTTCCTCCTCTTTTTCTCCTTCTCGACATATATATCGCCTTCATATCTCATTCAACTAATCAAACTTGATTCATCGATGACCATTATCGTATAATCTCATGCTAAAAGGCATTGGCATAGAAAAAAGCAGCTGATCAAGATCATTTCAAACCTCAAATATTTTCCAAAGAAAATGAATCCCCTGGATGAGTACAGAATCAAGGACACGAAGCCGCGGCTG...

CDS

2 records

下载 CDS FASTA

LOC130988863
ATGGATTGTGCCATTGCAACACTTTTTTGGCATAGAAAAAAGCAGCTGATCAAGATCATTTCAAACCTCAAATATTTTCCAAAGAAAATGAATCCCCTGGATGAGTACAGAATCAAGGACACGAAGCCGCGGCTGGGCGAGCGGTGGCCGCACGGCGGCGGGCGCAGCTGGATCGGGGGCGACAAGATCACGACCACCTACGACCTAGTGGAACAGATGTTCTACCTCTACGTCCGCGTGGTCAAGGCTCGCGATCTCCC...

LOC130988863
ATGAATCCCCTGGATGAGTACAGAATCAAGGACACGAAGCCGCGGCTGGGCGAGCGGTGGCCGCACGGCGGCGGGCGCAGCTGGATCGGGGGCGACAAGATCACGACCACCTACGACCTAGTGGAACAGATGTTCTACCTCTACGTCCGCGTGGTCAAGGCTCGCGATCTCCCCACCAACGCAGTCACCGGCGGCTGCGACCCCTACGTCGAGGTCAAGCTCGGCAACTACAAGGGCAAAACGCAGCGTTTCGAGAAGAA...

Protein

2 records

下载 Protein FASTA

XP_057768806.1
MDCAIATLFWHRKKQLIKIISNLKYFPKKMNPLDEYRIKDTKPRLGERWPHGGGRSWIGGDKITTTYDLVEQMFYLYVRVVKARDLPTNAVTGGCDPYVEVKLGNYKGKTQRFEKKSSPEWNQVFAFSKDKIQSSVVEIFVREKEMVGRDDYLGRVDFDLNEVPTRLPPDSPLAPQWYRLEERRRPAAESRLRGEVMLAVWIGSQADEAFPEAWHSDAAAVHGDGVFSVRSKVYVSPKLWYLRVNVIEAQDVEAAEAAPV...

XP_057768807.1
MNPLDEYRIKDTKPRLGERWPHGGGRSWIGGDKITTTYDLVEQMFYLYVRVVKARDLPTNAVTGGCDPYVEVKLGNYKGKTQRFEKKSSPEWNQVFAFSKDKIQSSVVEIFVREKEMVGRDDYLGRVDFDLNEVPTRLPPDSPLAPQWYRLEERRRPAAESRLRGEVMLAVWIGSQADEAFPEAWHSDAAAVHGDGVFSVRSKVYVSPKLWYLRVNVIEAQDVEAAEAAPVFVKGQVGNQVCKTKLFPNRTANPVWNEDL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器