当前解析结果
SmilChr06G001369| 统一新 Gene ID | SmilChr06G001369 |
|---|---|
| 名称 | SmilChr06G001369 |
| 描述 | bZIP transcription factor TGA10-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 14322527 - 14329787 / + |
| NCBI Gene ID | LOC130988864 |
|---|---|
| GeneID | 130988864 |
| locus_tag | - |
| NCBI Name | LOC130988864 |
| 原始查询 | LOC130988864 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | bZIP transcription factor TGA10-like |
| 产物 | bZIP transcription factor TGA10-like |
| Arabidopsis | AT5G06839 (TGA10)bZIP transcription factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:830575] identity=59.9; qcov=1.08; evalue=2.31e-172; confidence=high |
| Rice | Os09g0489500 (OsTGA10)- identity=51.9; qcov=1.14; evalue=8.03e-153; confidence=high |
| GO | GO:0003700 (DNA-binding transcription factor activity); GO:0006351 (DNA-templated transcription); GO:0006355 (regulation of DNA-templated transcription); GO:0043565 (sequence-specific DNA binding) |
| KEGG | smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00170 (bZIP_1); PF07716 (bZIP_2); PF14144 (DOG1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130988864 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057768809.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057768813.1 |
| 3 | Cytosol | 细胞质基质 | 0.60000 | XP_057768813.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057768809.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057768809.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:14322733 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | B107 |
Chr6:14322733 |
TG |
T |
1bp_deletion | CDS_variant | 1 | B107 |
Chr6:14322739 |
GGC |
G |
2bp_deletion | frameshift_variant | 1 | B107 |
Chr6:14322739 |
GGC |
G |
2bp_deletion | CDS_variant | 1 | B107 |
Chr6:14323107 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057768809.1PF07716
bZIP_2 163-202 aa
PF00170
bZIP_1 166-202 aa
PF14144
DOG1 256-329 aa
XP_057768810.1PF07716
bZIP_2 163-202 aa
PF00170
bZIP_1 166-202 aa
PF14144
DOG1 256-329 aa
XP_057768811.1PF07716
bZIP_2 139-178 aa
PF00170
bZIP_1 142-178 aa
PF14144
DOG1 232-305 aa
XP_057768812.1PF07716
bZIP_2 163-202 aa
PF00170
bZIP_1 166-202 aa
PF14144
DOG1 256-329 aa
XP_057768813.1PF07716
bZIP_2 110-149 aa
PF00170
bZIP_1 113-149 aa
PF14144
DOG1 203-276 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057768809.1 |
Pfam | PF07716 |
bZIP_2 | Coiled-coil | 163 | 202 | 6.7e-07 | 30.0 | Basic region leucine zipper |
XP_057768809.1 |
Pfam | PF00170 |
bZIP_1 | Coiled-coil | 166 | 202 | 1.7e-08 | 35.2 | bZIP transcription factor |
XP_057768809.1 |
Pfam | PF14144 |
DOG1 | Family | 256 | 329 | 8.4e-30 | 103.5 | Seed dormancy control |
XP_057768810.1 |
Pfam | PF07716 |
bZIP_2 | Coiled-coil | 163 | 202 | 6.7e-07 | 30.0 | Basic region leucine zipper |
XP_057768810.1 |
Pfam | PF00170 |
bZIP_1 | Coiled-coil | 166 | 202 | 1.7e-08 | 35.2 | bZIP transcription factor |
XP_057768810.1 |
Pfam | PF14144 |
DOG1 | Family | 256 | 329 | 8.8e-30 | 103.4 | Seed dormancy control |
XP_057768811.1 |
Pfam | PF07716 |
bZIP_2 | Coiled-coil | 139 | 178 | 6.2e-07 | 30.1 | Basic region leucine zipper |
XP_057768811.1 |
Pfam | PF00170 |
bZIP_1 | Coiled-coil | 142 | 178 | 1.6e-08 | 35.3 | bZIP transcription factor |
XP_057768811.1 |
Pfam | PF14144 |
DOG1 | Family | 232 | 305 | 9.6e-30 | 103.3 | Seed dormancy control |
XP_057768812.1 |
Pfam | PF07716 |
bZIP_2 | Coiled-coil | 163 | 202 | 6e-07 | 30.1 | Basic region leucine zipper |
XP_057768812.1 |
Pfam | PF00170 |
bZIP_1 | Coiled-coil | 166 | 202 | 1.5e-08 | 35.3 | bZIP transcription factor |
XP_057768812.1 |
Pfam | PF14144 |
DOG1 | Family | 256 | 329 | 8.3e-30 | 103.5 | Seed dormancy control |
XP_057768813.1 |
Pfam | PF07716 |
bZIP_2 | Coiled-coil | 110 | 149 | 5.7e-07 | 30.2 | Basic region leucine zipper |
XP_057768813.1 |
Pfam | PF00170 |
bZIP_1 | Coiled-coil | 113 | 149 | 1.4e-08 | 35.4 | bZIP transcription factor |
XP_057768813.1 |
Pfam | PF14144 |
DOG1 | Family | 203 | 276 | 8.6e-30 | 103.5 | Seed dormancy control |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
5 records
下载 cDNA FASTA5 records
下载 CDS FASTA5 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。