Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr06G001391

染色体: Chr06 坐标: 14537228-14542469 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr06G001391
名称SmilChr06G001391
描述zinc finger CCCH domain-containing protein 14-like
染色体 / SeqIDChr06 / NC_080392.1
坐标与链方向14537228 - 14542469 / -

ID 对照

NCBI Gene IDLOC130988881
GeneID130988881
locus_tag-
NCBI NameLOC130988881
原始查询LOC130988881

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述zinc finger CCCH domain-containing protein 14-like
产物zinc finger CCCH domain-containing protein 14-like
ArabidopsisAT5G06770 (AT5G06770)
KH domain-containing protein / zinc finger (CCCH type) family protein [Source:NCBI gene (formerly Entrezgene);Acc:830566]
identity=51.2; qcov=0.706; evalue=9.34e-59; confidence=high
RiceOs02g0194200 (OsC3H14)
-
identity=61.6; qcov=0.993; evalue=8.08e-110; confidence=high
GOGO:0003729 (mRNA binding); GO:0046872 (metal ion binding)
KEGG-
PfamPF00013 (KH_1); PF00642 (zf-CCCH); PF14608 (zf-CCCH_2)
InterPro-
eggNOG-
NRGeneID:130988881

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057768832.1
2 Cytoplasm 细胞质 1.00000 XP_057768832.1
3 Nucleoplasm 核质 0.60000 XP_057768832.1
4 Cytoplasmic granule 细胞质颗粒 0.40000 XP_057768832.1
5 Cytoplasmic ribonucleoprotein granule Cytoplasmic ribonucleoprotein granule 0.40000 XP_057768832.1

进入亚细胞定位查询

EMS 诱变突变

该基因暂未检索到已上线的精选 EMS CDS / LoF 突变,或 EMS 突变库仍在构建。

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057768832.1
299 aa
N
1
150
299
zf-CCCH_2
zf-CCCH
zf-CCCH_2
KH_1
zf-CCCH
zf-CCCH_2
C
PF14608 zf-CCCH_2 36-56 aa PF00642 zf-CCCH 99-124 aa PF14608 zf-CCCH_2 112-123 aa PF00013 KH_1 169-233 aa PF00642 zf-CCCH 267-291 aa PF14608 zf-CCCH_2 275-291 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057768832.1 Pfam PF14608 zf-CCCH_2 Domain 36 56 3.6e-07 31.1 RNA-binding, Nab2-type zinc finger
XP_057768832.1 Pfam PF00642 zf-CCCH Family 99 124 3.4e-17 62.6 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
XP_057768832.1 Pfam PF14608 zf-CCCH_2 Domain 112 123 3.6e-07 31.1 RNA-binding, Nab2-type zinc finger
XP_057768832.1 Pfam PF00013 KH_1 Domain 169 233 7.8e-14 51.9 KH domain
XP_057768832.1 Pfam PF00642 zf-CCCH Family 267 291 3.4e-17 62.6 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
XP_057768832.1 Pfam PF14608 zf-CCCH_2 Domain 275 291 3.6e-07 31.1 RNA-binding, Nab2-type zinc finger

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057912849.1
AATATAAATAAACTCCCACAATATTTTCAACATTAGTATTTCATCCCCACATTTTCTATAATTCGTTGCGCTCACTGTCGTGCTCTGTCTCTCTCTCTATCTCTAGCTGTAAGAGAAACCCTAGTTTCACTGTTTCAGTAAGATTTGAGCTCGACCAATCAATTAGTGTTTTTTTCATCTCTTTTTATACTCTATATCGCGACTCACCTCTCAGAACTTCATATTTTCGTGAATTCAAGGTTCCTTCACCGAATACTGGT...

CDS

1 records

下载 CDS FASTA
LOC130988881
ATGGATACTCGCAAAAGAGGCAGAGCTGAATTTGCTAACGGCGGTTTCAAGAAACCTAAGCCAGAAATGGACTCCTTATCAAGTGGTATAGGAAGCAAATCGAAGCCTTGCACGAAATTTTTCAGCATTGCTGGTTGTCCCTTTGGTGAGAACTGCCACTTCCTCCACCACGTTCCCGGCGGCTATAATGCTGTTGCCCAGATGATGAACCTAGCCCCTGCTCCCACCCCACGACCAGCGGGCGGTCCCCCGCCTGCCCA...

Protein

1 records

下载 Protein FASTA
XP_057768832.1
MDTRKRGRAEFANGGFKKPKPEMDSLSSGIGSKSKPCTKFFSIAGCPFGENCHFLHHVPGGYNAVAQMMNLAPAPTPRPAGGPPPAHQNGHGSAPAAVKTKVCNKYKTAEGCKFGNKCNFAHGEWELGKPIMPSHDNPRATGPMPPGRFSARPEPPVPGPAASFGATATAKISVDASLAGAVIGKGGVNSKQICRQTGTKLSIRDHETNPNLRNIELEGTFEQIQQASAMVRELIVSIGSGGGSGGPGRAFGGGGGGAAS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器