Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G001948`

染色体: Chr06 坐标: 24046295-24049717 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G001948`
名称	SmilChr06G001948
描述	protein DWD HYPERSENSITIVE TO UV-B 1-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	24046295 - 24049717 / `+`

ID 对照

NCBI Gene ID	`LOC130988925`
GeneID	`130988925`
locus_tag	`-`
NCBI Name	`LOC130988925`
原始查询	`LOC130988925`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein DWD HYPERSENSITIVE TO UV-B 1-like
产物	protein DWD HYPERSENSITIVE TO UV-B 1-like
Arabidopsis	`AT4G34280` (AT4G34280) transducin family protein / WD-40 repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:829578] identity=53.5; qcov=0.996; evalue=1.2e-145; confidence=high
Rice	`Os01g0924300` (OsWD40-29) - identity=27.6; qcov=0.365; evalue=1.96e-06; confidence=low
GO	GO:0005515 (protein binding); GO:0071493 (cellular response to UV-B); GO:0080008 (Cul4-RING E3 ubiquitin ligase complex)
KEGG	-
Pfam	PF00400 (WD40); PF23098 (Beta-prop_NOL10_N)
InterPro	-
eggNOG	-
NR	GeneID:130988925

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057768891.1`
2	Nucleus	细胞核	0.80000	`XP_057768891.1`
3	Cytosol	细胞质基质	0.80000	`XP_057768891.1`
4	Nucleoplasm	核质	0.20000	`XP_057768891.1`
5	Cell projection	细胞突起	0.20000	`XP_057768891.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:24047513`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A21,B28,C87,D5
`Chr6:24047852`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C83
`Chr6:24047879`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr6:24048358`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C2,C32,C68
`Chr6:24048405`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B139,B19,B32,C17,C4
`Chr6:24048503`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B75
`Chr6:24048538`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A21,B28,C87,D5
`Chr6:24048638`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B18,B52

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057768891.1

447 aa

224

447

Beta-prop_NOL10_N

WD40

PF23098 Beta-prop_NOL10_N 116-284 aa PF00400 WD40 251-281 aa

XP_057768892.1

447 aa

224

447

Beta-prop_NOL10_N

WD40

PF23098 Beta-prop_NOL10_N 116-284 aa PF00400 WD40 251-281 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057768891.1`	Pfam	`PF23098`	Beta-prop_NOL10_N	Repeat	116	284	2.1e-09	37.8	Nucleolar protein 10-like, N-terminal domain
`XP_057768891.1`	Pfam	`PF00400`	WD40	Repeat	251	281	4.8e-08	33.9	WD domain, G-beta repeat
`XP_057768892.1`	Pfam	`PF23098`	Beta-prop_NOL10_N	Repeat	116	284	2.1e-09	37.8	Nucleolar protein 10-like, N-terminal domain
`XP_057768892.1`	Pfam	`PF00400`	WD40	Repeat	251	281	4.8e-08	33.9	WD domain, G-beta repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057912909.1
AGACCATTTTATTAGAGCCTTTGCATTAGAGATGTTGTATGCTAACTCGGCTCGCTTACATTCAATATTCATGTGCATCACATGTAGTTATATTTAAAATGATTAAGATATCTGAAATTATTGAAAGCTGATAATTGAGAAAGAATATAGTACTTGTGCAGGAGCAGGAGAAGATAAGAGCAGATGAAGTGTCAACTACTGCAATAAGTTATCAGCACACCTCTTCTCTCTCCACATTCAAGTCTTTAAATTCTCTCCAT...

XM_057912908.1
AACTCGGCTCGCTTACATTCAATATTCATGTGCATCACATGTAGTTATATTTAAAATGATTAAGATATCTGAAATTATTGAAAGCTGATAATTGAGAAAGAATATAGTACTTGTGCAGGAGCAGGAGAAGATAAGAGCAGATGAAGTGTCAACTACTGCAATAAGTTATCAGCACACCTCTTCTCTCTCCACATTCAAGTCTTTAAATTCTCTCCATTTTCTTTCGCTTTCTGCTGTCAGAGATCCACTCATTTCAAAGT...

CDS

2 records

下载 CDS FASTA

LOC130988925
ATGGACAGTGTCATCACATCTCTAGGTCGTATGGAAGTGAAGAACGACTCGCCTCTAAAAGGTGGGGAAGTTGAAAGGGGGAAAGCCATCTTCTCAAAATACTACGAGTACTTGCCATACAAGCGCCAGCACAGGGAGAGTGTGCTCAACGTGCTGTATTCCCGTGAGACTGGCACGAGCAGCACGTACTGCTGCAAGCCATCAAGGCGAAGGTGTGCCTCGTCTGCTAGGAAGAGCCAGTGCTTCTACATGAGGTCGCT...

Protein

2 records

下载 Protein FASTA

XP_057768891.1
MDSVITSLGRMEVKNDSPLKGGEVERGKAIFSKYYEYLPYKRQHRESVLNVLYSRETGTSSTYCCKPSRRRCASSARKSQCFYMRSLCAAKFGSSVQPLSCPITNDTKEADRILRPRQFEYHPADSSLMAVGTLDGDVVVLNHETGNVVACIFPSLSMNSILGLCWLKQQPSKLLVGSDNGCLRLFDINEVRTKTGDSYCNSSVVFDDFELLTSVHVNSTDDRCLASGYSKKVAIYDICSGQRLQLLTDMHREPINVAKF...

XP_057768892.1
MDSVITSLGRMEVKNDSPLKGGEVERGKAIFSKYYEYLPYKRQHRESVLNVLYSRETGTSSTYCCKPSRRRCASSARKSQCFYMRSLCAAKFGSSVQPLSCPITNDTKEADRILRPRQFEYHPADSSLMAVGTLDGDVVVLNHETGNVVACIFPSLSMNSILGLCWLKQQPSKLLVGSDNGCLRLFDINEVRTKTGDSYCNSSVVFDDFELLTSVHVNSTDDRCLASGYSKKVAIYDICSGQRLQLLTDMHREPINVAKF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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