Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G001923`

染色体: Chr06 坐标: 23280582-23282684 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G001923`
名称	SmilChr06G001923
描述	F-box/kelch-repeat protein At3g23880-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	23280582 - 23282684 / `-`

ID 对照

NCBI Gene ID	`LOC130988951`
GeneID	`130988951`
locus_tag	`-`
NCBI Name	`LOC130988951`
原始查询	`LOC130988951`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	F-box/kelch-repeat protein At3g23880-like
产物	F-box/kelch-repeat protein At3g23880-like
Arabidopsis	`AT3G23880` (AT3G23880) F-box and associated interaction domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:821971] identity=28.3; qcov=0.933; evalue=6.98e-25; confidence=low
Rice	`Os12g0164300` (OsFbox646) - identity=25.8; qcov=0.722; evalue=9.96e-16; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00646 (F-box); PF07734 (FBA_1); PF08268 (FBA_3); PF12937 (F-box-like)
InterPro	-
eggNOG	-
NR	GeneID:130988951

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057768928.1`
2	Nucleus	细胞核	0.80000	`XP_057768928.1`
3	Chromosome	染色体	0.00000	`XP_057768928.1`
4	Centromere	着丝粒	0.00000	`XP_057768928.1`
5	Chromatin	染色质	0.00000	`XP_057768928.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:23280966`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A20,B129,B26,C36,C40
`Chr6:23281021`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A10,A19,B11,B112
`Chr6:23281032`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A20,B129,B26,C36,C40
`Chr6:23281148`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B8,B83,C76
`Chr6:23281198`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A25,B96,C86,D3
`Chr6:23281267`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A20,B10,B51,C48
`Chr6:23281340`	`A`	`AT`	1bp_insertion	frameshift_variant	161	A1,A10,A14,A15,A16,A18,A19,A20,A22,A23,A25,A4,A5,A6,A7,A8,B1,B10,B100,B103,B104,B106,B107,B108,B11,B110,B112,B113,B115,B118,B12,B120,B121,B123,B124,B125,B127,B129,B13,B130,B132,B134,B135,B136,B137,B138,B14,B15,B16,B17,B2,B21,B22,B24,B25,B26,B27,B29,B31,B33,B34,B35,B36,B38,B39,B4,B40,B42,B43,B44,B46,B47,B49,B5,B51,B52,B54,B55,B56,B60,B61,B62,B65,B67,B69,B71,B72,B75,B76,B77,B78,B79,B8,B82,B83,B86,B87,B88,B90,B92,B96,B97,B98,C1,C13,C14,C16,C17,C18,C2,C20,C21,C23,C24,C25,C26,C28,C29,C3,C31,C32,C35,C36,C37,C38,C39,C4,C40,C43,C45,C47,C48,C49,C50,C53,C55,C57,C6,C61,C62,C63,C68,C7,C70,C71,C72,C73,C75,C78,C79,C8,C81,C85,C86,C87,D1,D11,D3,D4,D6,D9
`Chr6:23281356`	`C`	`T`	EMS_canonical_SNV	stop_gained	15	A2,A21,A23,B105,B109,B28,B80,C22,C23,C33,C42,C58,C65,C84,C9
`Chr6:23281379`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C13,C72
`Chr6:23281403`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B105,B111,B119
`Chr6:23282185`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A10
`Chr6:23282207`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A20,B51,C48

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057768928.1

360 aa

180

360

F-box

F-box-like

FBA_3

FBA_1

PF00646 F-box 2-39 aa PF12937 F-box-like 2-39 aa PF08268 FBA_3 79-335 aa PF07734 FBA_1 96-301 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057768928.1`	Pfam	`PF00646`	F-box	Domain	2	39	4.5e-10	39.7	F-box domain
`XP_057768928.1`	Pfam	`PF12937`	F-box-like	Domain	2	39	1.8e-07	31.6	F-box-like
`XP_057768928.1`	Pfam	`PF08268`	FBA_3	Repeat	79	335	5.7e-15	55.8	F-box associated beta propeller domain
`XP_057768928.1`	Pfam	`PF07734`	FBA_1	Repeat	96	301	2.1e-20	73.7	F-box associated beta propeller domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057912945.1
TTGCCATTAAAGAAGAGATCAAGAAACCACAATCAAGAGAGAGAGAGAGAGAGTAAATGAGCCTACCGGAATATGTGATCACAGAAATCCTCTCAAGAATACCAGCAACACCACTCCTTCGATTCAAATGCGTATGCAAATCATGGCATAACATCATCAACGATCCCACATTCATCGCCAAGCACCACCAAACCATCTCGGCCACGCCGGAATCCGAGGCGGTGATGATCAGCCAGCGCAGCAACGCCACCAACAGGCGG...

CDS

1 records

下载 CDS FASTA

LOC130988951
ATGAGCCTACCGGAATATGTGATCACAGAAATCCTCTCAAGAATACCAGCAACACCACTCCTTCGATTCAAATGCGTATGCAAATCATGGCATAACATCATCAACGATCCCACATTCATCGCCAAGCACCACCAAACCATCTCGGCCACGCCGGAATCCGAGGCGGTGATGATCAGCCAGCGCAGCAACGCCACCAACAGGCGGGTCCTCTTGCTGCTGAGGAGCCCCGATAACGTCGTCGACCACGACTTCTCGACGTT...

Protein

1 records

下载 Protein FASTA

XP_057768928.1
MSLPEYVITEILSRIPATPLLRFKCVCKSWHNIINDPTFIAKHHQTISATPESEAVMISQRSNATNRRVLLLLRSPDNVVDHDFSTFLNDMFGHVRLVGPCNGIVCLYGYYDNIVLWNPAIRCFKKLPASQLPRPSNFKVRGGDLGVGFDPKTHDIKVLQILFCVSMDSQIVYQVEIYSSRMNSWKKLECSMPANIMCYNLWSMVYKNENFCWWAQDKNNVEVILSFNMVDEAFEMTQLPSDIEPLGGQHRTTRAIMPLK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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