当前解析结果
SmilChr06G002077| 统一新 Gene ID | SmilChr06G002077 |
|---|---|
| 名称 | SmilChr06G002077 |
| 描述 | phospholipid-transporting ATPase 1-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 27394950 - 27401239 / - |
| NCBI Gene ID | LOC130988975 |
|---|---|
| GeneID | 130988975 |
| locus_tag | - |
| NCBI Name | LOC130988975 |
| 原始查询 | LOC130988975 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | phospholipid-transporting ATPase 1-like |
| 产物 | phospholipid-transporting ATPase 1-like |
| Arabidopsis | AT5G04930 (ALA1)aminophospholipid ATPase 1 [Source:NCBI gene (formerly Entrezgene);Acc:830375] identity=69; qcov=1; evalue=0; confidence=high |
| Rice | Os01g0277600 (osALA2)- identity=64.9; qcov=0.946; evalue=0; confidence=high |
| GO | GO:0000287 (magnesium ion binding); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0016887 (ATP hydrolysis activity); GO:0045332 (phospholipid translocation); GO:0140326 (ATPase-coupled intramembrane lipid carrier activity) |
| KEGG | smil04148 (Efferocytosis - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00122 (E1-E2_ATPase); PF13246 (Cation_ATPase); PF16209 (PhoLip_ATPase_N); PF16212 (PhoLip_ATPase_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130988975 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole membrane | 液泡膜 | 0.80000 | XP_057768948.1 |
| 2 | Vacuole | 液泡 | 0.60000 | XP_057768948.1 |
| 3 | Cell membrane | 细胞膜 | 0.40000 | XP_057768948.1 |
| 4 | Endosome membrane | 内体膜 | 0.40000 | XP_057768948.1 |
| 5 | Trans-golgi network | Trans-golgi network | 0.20000 | XP_057768948.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:27395231 |
G |
A |
EMS_canonical_SNV | stop_gained | 11 | A1,A19,B121,B13,B43,B60,B86,C2,C32,C68,D6 |
Chr6:27396519 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A3 |
Chr6:27396981 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B12 |
Chr6:27397800 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B12 |
Chr6:27398698 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B27,B57,B75 |
Chr6:27398927 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A3,B34,B66,B98,C85 |
Chr6:27399127 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A23,C84 |
Chr6:27399178 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A10,A3,B66,B98,D1 |
Chr6:27399426 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A16,C26 |
Chr6:27399604 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B66,B98 |
Chr6:27399697 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B12 |
Chr6:27400186 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B10,B23,D3 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057768948.1PF16209
PhoLip_ATPase_N 78-144 aa
PF00122
E1-E2_ATPase 176-240 aa
PF13246
Cation_ATPase 569-732 aa
PF16212
PhoLip_ATPase_C 903-1140 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057768948.1 |
Pfam | PF16209 |
PhoLip_ATPase_N | Family | 78 | 144 | 5.7e-26 | 90.7 | Phospholipid-translocating ATPase N-terminal |
XP_057768948.1 |
Pfam | PF00122 |
E1-E2_ATPase | Domain | 176 | 240 | 8.4e-06 | 26.2 | P-type ATPase actuator domain |
XP_057768948.1 |
Pfam | PF13246 |
Cation_ATPase | Family | 569 | 732 | 4.1e-14 | 53.5 | P-type ATPase, cytoplasmic domain N |
XP_057768948.1 |
Pfam | PF16212 |
PhoLip_ATPase_C | Family | 903 | 1140 | 2.6e-71 | 241.1 | Phospholipid-translocating P-type ATPase C-terminal |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。