Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G002091`

染色体: Chr06 坐标: 27686960-27691377 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G002091`
名称	SmilChr06G002091
描述	zeaxanthin epoxidase, chloroplastic
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	27686960 - 27691377 / `-`

ID 对照

NCBI Gene ID	`LOC130988979`
GeneID	`130988979`
locus_tag	`-`
NCBI Name	`LOC130988979`
原始查询	`LOC130988979`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	zeaxanthin epoxidase, chloroplastic
产物	zeaxanthin epoxidase%2C chloroplastic
Arabidopsis	`AT5G67030` (ABA1) zeaxanthin epoxidase (ZEP) (ABA1) [Source:NCBI gene (formerly Entrezgene);Acc:836838] identity=68.5; qcov=1.02; evalue=0; confidence=high
Rice	`Os04g0448900` (OsABA1) - identity=72.4; qcov=0.911; evalue=0; confidence=high
GO	GO:0005515 (protein binding); GO:0009507 (chloroplast); GO:0009688 (abscisic acid biosynthetic process); GO:0016020 (membrane); GO:0052662 (zeaxanthin epoxidase activity); GO:0071949 (FAD binding)
KEGG	smil00906 (Carotenoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF00498 (FHA); PF01494 (FAD_binding_3); PF13450 (NAD_binding_8)
InterPro	-
eggNOG	-
NR	GeneID:130988979

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057768951.1`
2	Chloroplast membrane	叶绿体膜	0.80000	`XP_057768951.1`
3	Chloroplast stroma	叶绿体基质	0.40000	`XP_057768951.1`
4	Nucleus	细胞核	0.00000	`XP_057768951.1`
5	Chromosome	染色体	0.00000	`XP_057768951.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:27687684`	`GA`	`G`	1bp_deletion	frameshift_variant	1	A20
`Chr6:27687684`	`GA`	`G`	1bp_deletion	CDS_variant	1	A20
`Chr6:27687987`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr6:27688146`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C61
`Chr6:27688147`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A21,C36,C82
`Chr6:27690273`	`A`	`AC`	1bp_insertion	frameshift_variant	119	A11,A13,A16,A2,A20,A21,A23,A24,A3,A4,A5,A7,B10,B100,B101,B103,B104,B105,B106,B109,B11,B113,B114,B115,B117,B119,B12,B120,B121,B126,B132,B135,B136,B137,B138,B139,B15,B16,B17,B18,B20,B22,B26,B28,B3,B33,B35,B37,B38,B39,B4,B40,B45,B47,B48,B51,B52,B54,B55,B57,B60,B61,B66,B67,B69,B7,B70,B71,B72,B73,B79,B81,B82,B83,B88,B95,B97,B98,C10,C11,C15,C16,C20,C22,C24,C26,C31,C33,C34,C37,C38,C4,C42,C45,C47,C49,C50,C52,C54,C55,C57,C60,C62,C64,C65,C66,C67,C68,C74,C75,C76,C78,C8,C86,C87,D2,D3,D4,D5
`Chr6:27690275`	`TG`	`T`	1bp_deletion	frameshift_variant	119	A11,A13,A2,A20,A21,A23,A24,A25,A3,A4,A5,A7,A8,B10,B100,B101,B103,B104,B105,B106,B109,B11,B113,B114,B115,B117,B119,B12,B120,B121,B132,B135,B136,B137,B138,B139,B15,B16,B17,B18,B20,B22,B26,B28,B3,B33,B35,B37,B38,B39,B4,B40,B45,B47,B48,B51,B52,B54,B57,B60,B61,B66,B67,B69,B7,B70,B71,B72,B73,B79,B81,B82,B83,B88,B90,B95,B97,B98,C1,C10,C11,C16,C20,C22,C24,C26,C31,C33,C34,C37,C38,C4,C42,C45,C47,C49,C50,C52,C54,C55,C57,C60,C62,C64,C65,C66,C67,C68,C74,C75,C76,C78,C8,C86,C87,D2,D3,D4,D5
`Chr6:27690326`	`GT`	`G`	1bp_deletion	frameshift_variant	238	A1,A10,A11,A13,A14,A15,A16,A18,A19,A2,A20,A21,A23,A24,A25,A3,A4,A5,A6,A7,A8,B1,B10,B100,B101,B103,B104,B105,B106,B107,B108,B109,B11,B110,B111,B112,B113,B114,B115,B117,B118,B119,B12,B120,B121,B122,B124,B125,B126,B127,B128,B129,B13,B130,B131,B132,B133,B134,B135,B136,B137,B138,B139,B140,B15,B16,B17,B18,B19,B2,B20,B21,B22,B23,B24,B26,B27,B28,B29,B3,B30,B32,B33,B35,B36,B37,B38,B39,B4,B40,B41,B42,B43,B44,B45,B46,B47,B48,B49,B5,B50,B51,B52,B53,B54,B55,B56,B57,B58,B59,B6,B60,B61,B62,B63,B64,B65,B66,B67,B68,B69,B7,B70,B71,B72,B73,B74,B75,B76,B78,B79,B80,B81,B82,B83,B85,B86,B88,B89,B9,B90,B91,B92,B93,B94,B95,B96,B97,B98,B99,C1,C10,C11,C12,C14,C15,C16,C17,C18,C19,C2,C20,C22,C23,C24,C26,C27,C28,C29,C32,C33,C34,C35,C36,C37,C38,C39,C4,C40,C41,C42,C43,C44,C45,C46,C47,C49,C5,C50,C51,C52,C53,C54,C55,C56,C57,C58,C59,C6,C60,C61,C62,C63,C64,C65,C66,C67,C68,C69,C7,C70,C71,C73,C74,C75,C76,C77,C78,C8,C80,C81,C82,C83,C84,C85,C86,C87,C9,D10,D11,D2,D3,D4,D5,D6,D7,D8,D9
`Chr6:27690332`	`T`	`TG`	1bp_insertion	frameshift_variant	237	A1,A10,A11,A13,A14,A15,A16,A19,A2,A20,A21,A23,A24,A25,A3,A5,A6,A7,A8,B1,B10,B100,B101,B103,B104,B105,B106,B107,B108,B109,B11,B110,B111,B112,B113,B114,B115,B117,B118,B119,B12,B120,B121,B122,B124,B125,B126,B127,B128,B129,B13,B130,B131,B132,B133,B134,B135,B136,B137,B138,B139,B140,B15,B16,B17,B18,B19,B2,B20,B21,B22,B23,B24,B26,B27,B28,B29,B3,B30,B32,B33,B35,B36,B37,B38,B39,B4,B40,B41,B42,B43,B44,B45,B46,B47,B48,B49,B5,B50,B51,B52,B53,B54,B55,B56,B57,B58,B59,B6,B60,B61,B62,B63,B64,B65,B66,B67,B68,B69,B7,B70,B71,B72,B73,B74,B75,B76,B78,B79,B80,B81,B82,B83,B85,B86,B88,B89,B9,B90,B91,B92,B93,B94,B95,B96,B97,B98,B99,C1,C10,C11,C12,C14,C15,C16,C17,C18,C19,C2,C20,C22,C23,C24,C26,C27,C28,C29,C32,C33,C34,C35,C36,C37,C38,C39,C4,C40,C41,C42,C43,C44,C45,C46,C47,C49,C5,C50,C51,C52,C53,C54,C55,C56,C57,C58,C59,C6,C60,C61,C62,C63,C64,C65,C66,C67,C68,C69,C7,C70,C71,C72,C73,C74,C75,C76,C77,C78,C8,C80,C81,C82,C83,C84,C85,C86,C87,C9,D10,D11,D2,D3,D4,D5,D6,D7,D8,D9
`Chr6:27690769`	`CA`	`C`	1bp_deletion	frameshift_variant	88	A11,A20,A21,A25,A3,A4,B106,B107,B108,B11,B114,B12,B125,B126,B130,B132,B134,B136,B139,B15,B17,B19,B20,B22,B23,B24,B25,B26,B27,B28,B3,B30,B33,B41,B42,B44,B45,B51,B52,B53,B62,B63,B64,B65,B66,B69,B70,B72,B77,B8,B80,B82,B83,B89,B91,B93,B95,B98,C12,C14,C15,C19,C20,C31,C39,C4,C41,C43,C44,C46,C48,C51,C52,C55,C56,C57,C62,C66,C68,C71,C72,C73,C77,C8,C82,C87,D10,D7
`Chr6:27690773`	`C`	`CG`	1bp_insertion	frameshift_variant	93	A11,A20,A21,A25,A3,A4,B106,B107,B108,B11,B114,B12,B125,B126,B130,B132,B134,B136,B139,B15,B17,B19,B20,B22,B23,B24,B25,B26,B27,B28,B3,B30,B33,B41,B42,B44,B45,B48,B51,B52,B53,B62,B63,B64,B65,B66,B69,B70,B77,B8,B80,B82,B83,B89,B91,B93,B95,B98,C12,C14,C15,C19,C20,C25,C31,C35,C39,C4,C41,C43,C44,C46,C48,C51,C52,C53,C55,C56,C57,C62,C66,C68,C70,C71,C72,C73,C77,C8,C82,C87,D10,D4,D7
`Chr6:27690786`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C27

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057768951.1

652 aa

326

652

FAD_binding_3

NAD_binding_8

FAD_binding_3

FHA

PF01494 FAD_binding_3 70-241 aa PF13450 NAD_binding_8 73-99 aa PF01494 FAD_binding_3 350-393 aa PF00498 FHA 548-622 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057768951.1`	Pfam	`PF01494`	FAD_binding_3	Domain	70	241	6.5e-16	59.2	FAD binding domain
`XP_057768951.1`	Pfam	`PF13450`	NAD_binding_8	Domain	73	99	6.5e-05	23.8	NAD(P)-binding Rossmann-like domain
`XP_057768951.1`	Pfam	`PF01494`	FAD_binding_3	Domain	350	393	6.5e-16	59.2	FAD binding domain
`XP_057768951.1`	Pfam	`PF00498`	FHA	Family	548	622	5.1e-12	46.8	FHA domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057912968.1
ACATCAGAGTGACACGTGGCCGCGAAATCTCCTTCATTTACTCAAGACTGGCTCCCATTTCCCGCGGCCCCACCGCCGTCAATCTTCACACTGCCACACTCGTTAATATAGTTAAAAAATTCCCACAACGAGGTGTAAGAATAATCAGACGCCACCGTTGTATTGATTCTCGAATTTGCAGTTGAAGGGAAAAGAAAATGAGTTCAGCAGTTCTCTGTAATCCAATCAATCCCTCAGCAGCAGTTTCGTCAAGAAGGCAT...

CDS

1 records

下载 CDS FASTA

LOC130988979
ATGAGTTCAGCAGTTCTCTGTAATCCAATCAATCCCTCAGCAGCAGTTTCGTCAAGAAGGCATTTTTTTCCGGCTCAAATCCACGGCGCGGCGCCGAGCAAGAAGCCGTTTTCCTGCACGGGAGGAAATGGGGTGTCGAAGAGAGTGTCGACGGTGAGAGCGAGTGTGGCGGCGGCTCCGAGAGGCGGGGCGGAGGAGAAGAAGCTGCGGATTCTGGTGGCCGGCGGCGGCATCGGCGGGTTGGTTTTCGCATTGGCGGC...

Protein

1 records

下载 Protein FASTA

XP_057768951.1
MSSAVLCNPINPSAAVSSRRHFFPAQIHGAAPSKKPFSCTGGNGVSKRVSTVRASVAAAPRGGAEEKKLRILVAGGGIGGLVFALAAKRKGFDVVVFERDLSAIRGEGQYRGPIQIQSNALAVLEAIDMGVAEEVLSAGCITGDRINGLVDGISGNWYVKFDTFTPAAERGLPVTRVISRMTLQQILATAVGSDIIMNESNVMDFVDDGQKVTVKLENGQSYEGDLLVGADGIWSKVRKNLFGQTDPVYSGYTCYTGIAD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器