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Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G003014

染色体: Chr01 坐标: 49172764-49176736 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G003014
名称SmilChr01G003014
描述uncharacterized protein At2g24330-like
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向49172764 - 49176736 / +

ID 对照

NCBI Gene IDLOC130989065
GeneID130989065
locus_tag-
NCBI NameLOC130989065
原始查询LOC130989065

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述integral membrane metal-binding family protein (DUF2296) [Source:NCBI gene (formerly Entrezgene);Acc:829235]; symbol=AT4G31080; hit=AT4G31080; species=arabidopsis; confidence=high
产物integral membrane metal-binding family protein (DUF2296) [Source:NCBI gene (formerly Entrezgene);Acc:829235]; symbol=AT4G31080; hit=AT4G31080; species=arabidopsis; confidence=high
ArabidopsisAT4G31080 (AT4G31080)
integral membrane metal-binding family protein (DUF2296) [Source:NCBI gene (formerly Entrezgene);Acc:829235]
identity=62.3; qcov=0.886; evalue=1.47e-148; confidence=high
RiceOs02g0631000
-
identity=55.8; qcov=0.826; evalue=5.16e-115; confidence=high
GOGO:0071782 (endoplasmic reticulum tubular network); GO:0071786 (endoplasmic reticulum tubular network organization)
KEGG-
PfamPF10058 (Zn_ribbon_10); PF31016 (Lunapark_N)
InterPro-
eggNOG-
NRGeneID:130989065

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Endoplasmic reticulum 内质网 0.80000 XP_057769026.1
2 Endoplasmic reticulum membrane 内质网膜 0.80000 XP_057769026.1
3 Golgi apparatus 高尔基体 0.40000 XP_057769026.1
4 Nucleus membrane 核膜 0.20000 XP_057769026.1
5 Trans-golgi network Trans-golgi network 0.20000 XP_057769026.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:49173952 G A EMS_canonical_SNV CDS_variant 3 A21,B44,D10
Chr1:49174839 C T EMS_canonical_SNV CDS_variant 2 A22,B59
Chr1:49175875 G A EMS_canonical_SNV CDS_variant 1 B35
Chr1:49175891 G A EMS_canonical_SNV CDS_variant 1 B102
Chr1:49176410 C T EMS_canonical_SNV CDS_variant 1 C60
Chr1:49176425 G A EMS_canonical_SNV CDS_variant 4 A15,A7,B134,B59

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057769026.1
386 aa
N
1
193
386
Lunapark_N
Zn_ribbon_10
C
PF31016 Lunapark_N 46-174 aa PF10058 Zn_ribbon_10 278-328 aa
XP_057769031.1
386 aa
N
1
193
386
Lunapark_N
Zn_ribbon_10
C
PF31016 Lunapark_N 46-174 aa PF10058 Zn_ribbon_10 278-328 aa
XP_057769032.1
386 aa
N
1
193
386
Lunapark_N
Zn_ribbon_10
C
PF31016 Lunapark_N 46-174 aa PF10058 Zn_ribbon_10 278-328 aa
XP_057769037.1
386 aa
N
1
193
386
Lunapark_N
Zn_ribbon_10
C
PF31016 Lunapark_N 46-174 aa PF10058 Zn_ribbon_10 278-328 aa
XP_057769038.1
386 aa
N
1
193
386
Lunapark_N
Zn_ribbon_10
C
PF31016 Lunapark_N 46-174 aa PF10058 Zn_ribbon_10 278-328 aa
XP_057769040.1
386 aa
N
1
193
386
Lunapark_N
Zn_ribbon_10
C
PF31016 Lunapark_N 46-174 aa PF10058 Zn_ribbon_10 278-328 aa
XP_057769045.1
386 aa
N
1
193
386
Lunapark_N
Zn_ribbon_10
C
PF31016 Lunapark_N 46-174 aa PF10058 Zn_ribbon_10 278-328 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057769026.1 Pfam PF31016 Lunapark_N Domain 46 174 2e-06 28.6 Lunapark N-terminal membrane domain
XP_057769026.1 Pfam PF10058 Zn_ribbon_10 Family 278 328 1.5e-20 73.4 ER junction formation factor lunapark, zinc ribbon finger
XP_057769031.1 Pfam PF31016 Lunapark_N Domain 46 174 2e-06 28.6 Lunapark N-terminal membrane domain
XP_057769031.1 Pfam PF10058 Zn_ribbon_10 Family 278 328 1.5e-20 73.4 ER junction formation factor lunapark, zinc ribbon finger
XP_057769032.1 Pfam PF31016 Lunapark_N Domain 46 174 2e-06 28.6 Lunapark N-terminal membrane domain
XP_057769032.1 Pfam PF10058 Zn_ribbon_10 Family 278 328 1.5e-20 73.4 ER junction formation factor lunapark, zinc ribbon finger
XP_057769037.1 Pfam PF31016 Lunapark_N Domain 46 174 2e-06 28.6 Lunapark N-terminal membrane domain
XP_057769037.1 Pfam PF10058 Zn_ribbon_10 Family 278 328 1.5e-20 73.4 ER junction formation factor lunapark, zinc ribbon finger
XP_057769038.1 Pfam PF31016 Lunapark_N Domain 46 174 2e-06 28.6 Lunapark N-terminal membrane domain
XP_057769038.1 Pfam PF10058 Zn_ribbon_10 Family 278 328 1.5e-20 73.4 ER junction formation factor lunapark, zinc ribbon finger
XP_057769040.1 Pfam PF31016 Lunapark_N Domain 46 174 2e-06 28.6 Lunapark N-terminal membrane domain
XP_057769040.1 Pfam PF10058 Zn_ribbon_10 Family 278 328 1.5e-20 73.4 ER junction formation factor lunapark, zinc ribbon finger
XP_057769045.1 Pfam PF31016 Lunapark_N Domain 46 174 2e-06 28.6 Lunapark N-terminal membrane domain
XP_057769045.1 Pfam PF10058 Zn_ribbon_10 Family 278 328 1.5e-20 73.4 ER junction formation factor lunapark, zinc ribbon finger

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

7 records

下载 cDNA FASTA
XM_057913057.1
ATTTCAGAGTTTTAACACCTAAAAAAAAGGAAGCAAATGTGTTTATGAATATGTTTTAATGAATCATATAACGATCCTATATTAAATTTTAAATAGGAATTAGCATTTAAGATGATTGCTAAATTAGTAACTATAATCTACTACATATTTGATAATTCACATTTTCCCAAAAATGTTTTGTAATAATATTGTTTTGCATCTGAAAATTATATTGAGCTCAAACGTCTAAAAAAAAACTCGTGGGTATGATTTGTAACATA...
XM_057913043.1
TCAAACGTCTAAAAAAAAACTCGTGGGTATGATTTGTAACATAGAATACTACTAGTATTCTTTTAATTCTTCATTACATGGTTGGCACATGGGATGGGTCTCCGATTTCAAAAAGAGGATACGCGTCGTCTCGTTTATTTGCGAAGTTTGCTGCTTTGATTTTCTCTCCTCATCATTTCCATTGAAAGATCTAGAACCTCCATCACGCACTTCAATTGCACATCCAATTTAGGCTTTTTCTTCACATCGCAATTCAGAGC...

CDS

7 records

下载 CDS FASTA
LOC130989065
ATGGCTGCAGATTCTAAGAACGACGTTAAAGAGTCTACCACATCGACAGATGCTGAGATAAAAACAAAAACCATGAAGAAGAAGAAAGGATTGTTCTCAAGATTGTGGGGTGCAATATTTAGATTACATAGGGATGATTTTGAAAAGAGATTGCAATATATATCCAAAGAAGAGGCCGCTATTCTTTCAAGGATTACAAGACGTTCAAATAGCTGGCGGAGAATGACTAGGCACCTGATGTTATTCTCAGTTCTTTTTGA...
LOC130989065
ATGGCTGCAGATTCTAAGAACGACGTTAAAGAGTCTACCACATCGACAGATGCTGAGATAAAAACAAAAACCATGAAGAAGAAGAAAGGATTGTTCTCAAGATTGTGGGGTGCAATATTTAGATTACATAGGGATGATTTTGAAAAGAGATTGCAATATATATCCAAAGAAGAGGCCGCTATTCTTTCAAGGATTACAAGACGTTCAAATAGCTGGCGGAGAATGACTAGGCACCTGATGTTATTCTCAGTTCTTTTTGA...

Protein

7 records

下载 Protein FASTA
XP_057769026.1
MAADSKNDVKESTTSTDAEIKTKTMKKKKGLFSRLWGAIFRLHRDDFEKRLQYISKEEAAILSRITRRSNSWRRMTRHLMLFSVLFEAIALGYAIMSTKSLDLDWKMRALRVLPVFLLPALSSITYFTLRSFTRMFDQKDNKTLEKLRAERQAKLDELKEKTNYYSTQQLIQRYDTDPAAKAAAATVLASKLGADSGLKLYMEDVATGKSNDLEVAKTSGLRNRKPSPTNNSPRSASTHHTGEEISNHVGFEGTTMSQQH...
XP_057769031.1
MAADSKNDVKESTTSTDAEIKTKTMKKKKGLFSRLWGAIFRLHRDDFEKRLQYISKEEAAILSRITRRSNSWRRMTRHLMLFSVLFEAIALGYAIMSTKSLDLDWKMRALRVLPVFLLPALSSITYFTLRSFTRMFDQKDNKTLEKLRAERQAKLDELKEKTNYYSTQQLIQRYDTDPAAKAAAATVLASKLGADSGLKLYMEDVATGKSNDLEVAKTSGLRNRKPSPTNNSPRSASTHHTGEEISNHVGFEGTTMSQQH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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