当前解析结果
SmilChr06G002323| 统一新 Gene ID | SmilChr06G002323 |
|---|---|
| 名称 | SmilChr06G002323 |
| 描述 | zinc finger BED domain-containing protein RICESLEEPER 1-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 33548140 - 33551040 / + |
| NCBI Gene ID | LOC130989151 |
|---|---|
| GeneID | 130989151 |
| locus_tag | - |
| NCBI Name | LOC130989151 |
| 原始查询 | LOC130989151 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | zinc finger BED domain-containing protein RICESLEEPER 1-like |
| 产物 | zinc finger BED domain-containing protein RICESLEEPER 1-like |
| Arabidopsis | AT3G42170 (DAYSLEEPER)BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER [Source:NCBI gene (formerly Entrezgene);Acc:3769417] identity=28.3; qcov=0.945; evalue=4.22e-80; confidence=low |
| Rice | Os03g0733400- identity=31.3; qcov=0.97; evalue=9.51e-99; confidence=low |
| GO | GO:0003677 (DNA binding); GO:0046983 (protein dimerization activity) |
| KEGG | - |
| Pfam | PF05699 (Dimer_Tnp_hAT); PF14372 (hAT-like_RNase-H); PF27039 (ZBED1_RNase-like_helical); PF27041 (ZBED1_RNase-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130989151 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057769071.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057769071.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057769071.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057769071.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057769071.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:33548685 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A14,B37,B91,C53 |
Chr6:33548703 |
CAA |
C |
2bp_deletion | frameshift_variant | 1 | C25 |
Chr6:33548703 |
CAA |
C |
2bp_deletion | CDS_variant | 1 | C25 |
Chr6:33548718 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A14,B37 |
Chr6:33548720 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A14,B37 |
Chr6:33548750 |
GA |
G |
1bp_deletion | frameshift_variant | 4 | A25,C19,C30,C36 |
Chr6:33548750 |
GA |
G |
1bp_deletion | CDS_variant | 4 | A25,C19,C30,C36 |
Chr6:33548852 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A25,C46 |
Chr6:33548861 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A25,C46 |
Chr6:33548892 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B133,B74,B84 |
Chr6:33548972 |
TGC |
T |
2bp_deletion | frameshift_variant | 18 | A6,B134,B19,B37,B40,B45,B7,B87,B94,C20,C24,C28,C3,C40,C51,C56,C78,D2 |
Chr6:33548978 |
C |
T |
EMS_canonical_SNV | stop_gained | 20 | A20,A5,B103,B120,B122,B123,B21,B42,B51,B66,B84,B85,B91,C14,C25,C31,C39,C50,C53,D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057769071.1PF27041
ZBED1_RNase-like 196-291 aa
PF27039
ZBED1_RNase-like_helical 294-402 aa
PF14372
hAT-like_RNase-H 432-515 aa
PF05699
Dimer_Tnp_hAT 559-647 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057769071.1 |
Pfam | PF27041 |
ZBED1_RNase-like | Domain | 196 | 291 | 1.9e-29 | 102.3 | ZBED1 RNase-like domain |
XP_057769071.1 |
Pfam | PF27039 |
ZBED1_RNase-like_helical | Domain | 294 | 402 | 4.5e-33 | 114.3 | ZBED1 RNase-like helical domain |
XP_057769071.1 |
Pfam | PF14372 |
hAT-like_RNase-H | Domain | 432 | 515 | 2.1e-21 | 76.7 | hAT-like transposase, RNase-H fold |
XP_057769071.1 |
Pfam | PF05699 |
Dimer_Tnp_hAT | Domain | 559 | 647 | 2.5e-17 | 63.1 | hAT family C-terminal dimerisation region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。